MmuEX1020295 @ mm10
Exon Skipping
Gene
ENSMUSG00000022565 | Plec
Description
plectin [Source:MGI Symbol;Acc:MGI:1277961]
Coordinates
chr15:76170975-76183008:-
Coord C1 exon
chr15:76182910-76183008
Coord A exon
chr15:76181744-76181746
Coord C2 exon
chr15:76170975-76178385
Length
3 bp
Sequences
Splice sites
3' ss Seq
TGCAGCGGCGCATGCAGGAGGAG
3' ss Score
-16
5' ss Seq
GAGGTGGCG
5' ss Score
0.4
Exon sequences
Seq C1 exon
TACGTGGATCTGCGCACGCGCTACAGCGAGCTGACCACGCTCACGAGCCAGTATATCAAGTTCATCAGTGAGACCCTTCGCCGCATGGAAGAGGAGGAG
Seq A exon
GAG
Seq C2 exon
ATGCAGACTGTGCAGCAGGAGCAGATACTGCAGGAGACCCAGGCCCTGCAGAAGAGCTTCCTCTCTGAGAAGGACAGCCTGCTGCAGCGCGAGCGCTTCATCGAGCAGGAGAAGGCCAAGCTGGAGCAGCTCTTCCAGGACGAGGTGGCTAAAGCAAAGCAGCTGCGTGAGGAGCAGCAGCGGCAGCAGCAGCAGATGGAACAGGAAAAGCAGGAGCTGATGGCCAGCATGGAGGAGGCCAGGAGGCGGCAGCGCGAGGCTGAGGAGGGCGTGAGGCGCAAGCAAGAGGAACTGCAGCATCTGGAGCAGCAGCGGCAGCAGCAGGAGAAGCTCCTGGCGGAGGAAAACCAGCGGCTGCGAGAGCGGCTGCAGCGCCTGGAGGAAGAGCACCGCGCTGCCTTGGCTCACTCTGAGATCGCCACCACCCAGGCCGCTTCCACGAAGGCACTGCCCAACGGCCGGGATGCACCCGATGGCCCGTCCGTGGAGGCTGAACCCGAGTACACCTTTGAGGGACTACGTCAGAAGGTGCCGGCCCAGCAGCTACAGGAAGCAGGCATCCTGAGCCAGGAGGAACTGCAGCGTTTGGCACAGGGTCACACCACGGTGGCTGAGCTCACGCAGCGGGAAGATGTGTACCGGTACCTGAAGGGCCGCAGCAGCATTGCAGGACTGTTACTGAAGCCCACCAATGAGAAACTGAGTGTCTACACAGCCCTACAGCGGCAGCTGCTCAGCCCCGGAACAGCTCTGATCTTGCTGGAGGCCCAGGCAGCCTCGGGCTTCCTGCTGGATCCTGTGCGGAATCGGCGGCTGACAGTCAATGAGGCTGTGAAGGAGGGTGTCGTGGGTCCTGAGCTGCACCACAAACTGCTGTCAGCTGAGCGTGCCGTCACCGGCTACAAGGACCCCTATACAGGGGAACAGATCTCGCTCTTCCAGGCCATGAAGAAGGACCTTATTGTCAGGGACCATGGCGTCCGCCTGCTGGAGGCCCAGATCGCCACCGGTGGCATCATTGATCCTGTGCACAGCCACCGTGTGCCTGTGGACGTGGCCTACAAACGTGGCTACTTCGATGAAGAGATGAACCGCATCTTGTCTGACCCAAGCGATGACACCAAGGGCTTCTTCGACCCCAACACCCACGAGAACCTCACTTACCTGCAGCTGCTGGAGCGCTGTGTGGAGGACCCCGAGACCGGCCTGCGCCTCCTGCCACTCACAGATAAGGCTGCCAAGGGTGGCGAGCTGGTGTACACCGATACGGAGGCCCGTGACGTCTTCGAAAAGGCCACCGTGTCTGCACCGTTTGGCAAGTTCCAGGGCAGGACCGTGACCATCTGGGAGATCATCAACTCGGAGTACTTCACGGCGGAACAGCGACGGGACCTGCTGCAGCAGTTCCGCACGGGCCACATCACGGTGGAGAAAATCATCAAAATCGTCATCACAGTGGTGGAGGAACACGAGCGGAAGGGCCAGCTCTGCTTTGAGGGCCTCCGTGCCCTCGTGCCCGCCGCAGAGCTGCTGGACAGTGGGGTCATCAGCCACGAACTCTACCAGCAGCTGCAGCGGGGTGAGCGTTCTGTGCGGGAAGTGGCCGAGGCGGACAGCGTGAGGCAGGCCCTGCGGGGTACCAATGTCATCGCCGGTGTGTGGCTGGAAGAAGCAGGGCAGAAGCTGAGCATCTATGAGGCCCTGAAGAAAGACTTGCTGCAGCCAGAGGTGGCTGTGGCCTTGCTGGAGGCCCAGGCTGGCACTGGGCATATCATCGACCCTGCCACCAGCGCCAGGCTGACTGTGGACGAGGCGGTGCGTGCTGGCCTGGTGGGGCCTGAGCTGCACGAGAAGCTGCTGTCAGCCGAGAAGGCCGTGACAGGCTACAGGGATCCCTACTCAGGACAGAGTGTCTCACTGTTCCAGGCCTTGAAGAAGGGTCTCATCCCCCGAGAACAGGGCCTGCGCCTGCTGGATGCCCAGTTATCCACTGGTGGCATTGTAGACCCCAGCAAAAGCCACCGTGTGCCCCTGGATGTTGCCTATGCCCGGGGCTACCTGGACAAAGAGACTAACAGGGCCCTGACGTCACCCAGAGATGATGCCAGAGTCTACCATGACCCCAGCACCCAGGAGCCAGTCACCTACAGCCAGCTCCAACAGCGGTGCCGGTCTGACCAGCTGACCGGCTTGAGCCTACTGCCACTCTCAGAGAAGGCCGTCCGGGCCCGGCAGGAGGAGGTCTACTCTGAGCTCCAGGCCCGGGAGACACTGGAGCAGGCCAAGGTTGAGGTTCCTGTGGGCAGCTTTAAGGGCAGGGCGATGACTGTGTGGGAGCTCATCAGCTCTGAATACTTTACTGAGGAGCAGCGGCAGGAGTTGCTGCGGCAGTTCCGCACAGGCAAGGTCACCGTGGAGAAGGTCATCAAGATTGTCATCACCATCGTGGAGGAGGTGGAGACTCGGCGGCAGGAGAGACTGTCCTTTAGTGGCCTCCGTGCCCCTGTGCCGGCCAGTGAGCTCCTGGACGCCAAGATCCTCAGCAGAGCTCAGTTTGACCAGCTCAAGGATGGCAAGACATCAGTCAAAGAGCTGTCCGAGGTGGGCTCCGTGCGGACTCTGCTGCAGGGCAGCGGCTGCCTGGCCGGCATCTATCTGGAGGACTCGAAGGAGAAAGTAACCATCTATGAGGCCATGCGCCGGGGCCTCCTCAGACCCAGCACAGCCACGCTCCTGCTGGAGGCCCAGGCAGCCACTGGTTTCCTGGTGGACCCTGTGCGGAACCAACGTCTGTATGTCCATGAGGCTGTCAAGGCGGGCGTAGTGGGCCCTGAACTCCATGAGAAGCTGCTGTCGGCCGAGAAGGCCGTCACTGGCTACAAGGATCCCTACTCGGGCAACACCATCTCGCTGTTCCAGGCCATGAAAAAGGGCCTGGTCCTCAGGGACCATGCCATCCGCCTGCTGGAGGCCCAGGTCGCCACGGGTGGCATCATCGACCCGGTGCACAGCCACCGCCTGCCTGTGGACGTGGCCTACCAGCGTGGCTACTTCGATGAGGAGATGAACCGTGTGCTGGCAGATCCAAGTGATGACACCAAGGGCTTCTTTGACCCCAACACCCACGAGAACCTCACCTACCTGCAGCTGCTGGAGCGCTGTGTGGAGGACCCCGAGACCGGCCTGCGCCTCCTGCCACTCAAAGGGGCAGAGAAGACCGAGGTGGTAGAAACCACACAGGTGTATACTGAGGAGGAGACTCGGAGGGCGTTCGAGGAGACGCAGATTGACATCCCGGGTGGTGGCAGCCACGGTGGCTCCTCCATGTCTCTGTGGGAGGTGATGCAGTCAAACATGATCCCGGAGGATCAGCGTGCCCGGCTCATGGCTGACTTTCAGGCTGGGAGGGTAACCAAGGAACGCATGATCATTATCATCATCGAAATCATCGAGAAGACCGAGATCATCCGCCAGCAGAACCTGGCCTCCTATGACTACGTGCGCCGCCGCCTCACTGCCGAAGACCTGTACGAGGCCCGGATCATCTCCCTTGAGACCTACAACCTCTTCCGGGAAGGCACCAAGAACCTCCGTGAAGTGCTGGAGATGGAATCTGCCTGGCGCTACCTTTACGGCACAGGCGCGGTGGCCGGTGTCTACCTGCCTGGCTCCAGGCAGACGCTAACCATCTACCAGGCCCTTAAGAAGGGGTTGCTGAGTGCCGAGGTGGCCCGCTTATTGCTGGAAGCACAGGCAGCCACGGGCTTCCTGCTGGACCCAGTGAAGGGGGAGCGGCTGACCGTGGATGAGGCTGTGCGGAAGGGCCTGGTAGGCCCCGAGCTGCATGACCGCCTCCTCTCTGCCGAGCGAGCTGTAACTGGTTACCGAGACCCCTACACGGAACAGACCATCTCACTCTTCCAGGCCATGAAGAAGGAGCTGATCCCTGCTGAGGAGGCGCTGAGGCTGCTGGATGCGCAGCTAGCCACAGGAGGCATTGTGGACCCCCGCCTGGGTTTCCACCTCCCTCTGGAGGTGGCTTACCAACGCGGCTACCTCAATAAGGACACGCACGACCAGCTGTCGGAGCCCAGCGAGGTGCGCAGCTACGTGGACCCCTCCACGGATGAGCGGCTCAGCTACACACAGCTGCTCAAGCGTTGCCGCCGTGATGACCCCAGCGGCCAGATGCTGCTGCTGCTCTCTGATGCCCGCAAGCTGACCTTCCGCGGTCTCCGCAAGCAGATCACTGTGGAGGAGCTGGTACGCTCTCAAGTCATGGACGAGGCCACAGCGCTACAGCTACAAGAAGGCCTGACCTCCATCGAGGAGGTCACTAAGAACCTGCAGAAGTTCCTCGAGGGTACCAGCTGCATTGCCGGAGTCTTTGTTGATGCCACCAAGGAACGGCTCTCGGTGTACCAGGCTATGAAGAAGGGCATCATCCGCCCCGGGACAGCCTTTGAGCTCCTGGAAGCACAGGCAGCCACCGGCTATGTCATTGACCCCATCAAGGGACTCAAGCTGACGGTGGAAGAAGCCGTTCGTATGGGTATTGTGGGCCCCGAGTTCAAGGACAAGCTGCTGTCAGCTGAGCGTGCCGTCACTGGCTACAAGGACCCCTACTCTGGGAAACTCATCTCCCTCTTCCAGGCCATGAAGAAGGGCCTGATCCTGAAGGACCATGGCATCCGTCTGCTGGAGGCTCAGATCGCCACTGGGGGCATCATTGACCCCGAGGAGAGCCACCGTTTGCCTGTGGAAGTGGCCTATAAGCGCGGCCTCTTTGATGAGGAGATGAACGAGATCTTGACTGATCCCTCAGATGACACCAAGGGTTTCTTTGACCCCAACACAGAGGAGAACCTCACTTACCTGCAGCTGATGGAGCGCTGCATCACTGACCCCCAGACGGGCCTGTGTCTCCTGCCCCTGAAGGAGAAGAAGCGGGAACGGAAGACATCCTCCAAGTCCTCAGTGCGCAAGCGCCGCGTGGTGATTGTGGACCCAGAGACGGGCAAGGAGATGTCTGTGTACGAGGCCTACCGCAAGGGTCTCATTGACCACCAGACGTACCTGGAGTTGTCGGAGCAGGAGTGTGAGTGGGAAGAGATCACCATCTCCTCCTCAGATGGCGTCGTCAAGTCTATGATCATCGACCGCCGCTCTGGTCGCCAGTATGACATCGACGACGCCATCACCAAGAACCTCATTGACCGCTCAGCACTGGACCAGTACCGCGCTGGTACGCTTTCGATCACTGAGTTTGCTGACATGCTCTCAGGCAATGCCGGTGGCTTCCGTTCCCGCTCCTCCTCTGTGGGCTCATCTTCCTCCTACCCCATCAGTTCTGCTGGCCCCAGGACCCAGCTAGCCTCCTGGTCTGATCCGACTGAGGAGACTGGCCCCGTGGCCGGCATCCTGGACACAGAGACTCTGGAGAAGGTGTCCATCACGGAGGCCATGCACCGCAACCTGGTAGACAACATCACCGGCCAGCGGCTGCTGGAGGCCCAAGCCTGCACCGGGGGCATCATTGACCCCAGCACTGGTGAGCGCTTCCCGGTCACTGAAGCTGTCAACAAGGGCCTGGTGGACAAGATCATGGTAGACCGTATCAATCTGGCCCAGAAGGCCTTCTGTGGGTTTGAGGACCCACGCACCAAGACCAAGATGTCAGCTGCCCAGGCCCTGAAGAAGGGCTGGCTGTACTATGAGGCAGGCCAGCGTTTCCTGGAGGTGCAGTACCTGACCGGTGGTCTGATCGAGCCTGACACGCCCGGCCGTGTGTCTCTCGACGAAGCTCTGCAACGTGGCACTGTGGATGCCCGCACAGCCCAGAAGCTGCGTGATGTCAGTGCTTACTCCAAGTACCTCACGTGCCCCAAGACCAAGCTCAAGATCTCCTACAAGGACGCTCTGGACCGTAGCATGGTGGAGGAGGGCACGGGGCTGAGGCTGCTGGAGGCTGCGGCACAGTCCAGCAAGGGCTACTACAGCCCGTACAGCGTCAGTGGCTCTGGCTCGACCGCCGGCTCACGCACTGGTTCACGCACCGGCTCCAGGGCCGGCTCCCGGCGTGGCAGCTTTGATGCCACTGGCTCTGGCTTCTCCATGACCTTTTCTTCTTCCTCCTACTCTTCCTCAGGCTATGGCCGCCGCTATGCCTCAGGGCCTTCAGCCTCTCTTGGGGGCCCTGAGTCTGCAGTGGCCTGATCCCCTCAGCCTGCATCCTGCCTTCCCGCTCTGCATGTGGCCGGGCTCCCTGTGGAGGCACTGGGGTCTTCTTTTTTTTTTTCTTTTTTTTTCCTTTTTAACATTTAAAGGTGTCTTCCTCCCAAGCGGTGCCTAAAATCTAACCAAAAAGACCAGACTAACACATTAATATATGTATGCGATGTCCAGACAGCCTGTGTCTTGGGGAACAGGGCTGGCCCAGGCCCAGTGACCACTTCAATCTCCTGGGTTCTCCCTAAATCCTTTCTACCTGCCACTCACCACAGCCAGGTGCCTTGGAGAATCCAGAGCTGGGCATTCAGCCTATACCACTCCTGTCTCTCCTGGGAGGATTCTATCTGGGAAAGGCCCCCAGACCTCTAAGCCAACCCCACTGGATGTCTACCTGCTGGTCCTAGCTGCTGAGGGGAACTGGGGACAGTCGTGTGAGCAGACAGCTCTTGAGGCCTCTGTCCTGAGCCAGCTGCTTCTCCCCAGTCTATCTCTGAATGTCCTGTATATTCAGTGGGTTTTGCTGGCCAAGGGAAGATCCCAGGCCAACCATCTCTTCCAGCCTACCCAGAGAAGCCCCTTCCCCATGGGAAGATAAGGCCTGGTCCTGGCCCCAGCCTCCCGCCTGGCTCCTGCAGCTGCCATTGGAGCTATGCTTTGTAGCTCAACACCCCATACTTATTCCCCTGAGACCTGAGCCTCTGCTTCAGCCTTCCAGCCTCAGCTCCCCTTGTAAGTGCCTTCTGTGTCCTTGTACCCAGGCCCTAAAGACCCAGACCCAGGGTAGGAGATGGACATTCTGGCTGGGCGGGGCTGGAGGGTTCTGCAGATCTGAGACTTCTCCTGCTCCAGAGGCCCAGGGACTCTTCAAGCCTGTGGAACCCCTCTCTGGGTGCTGCTGCCCACCTCACTCCCAGGGAGCCCTGGCCCCTCCATGGCCCAGAGACACCGGCTGGCCCATCTATGCTAACAGAAGCATTTGGCCAGTGACACTCTCCCTTCCTTCCTGTCCAGCCAGTCCCGGGCCTTGGTGGCTCCTCCCCTGCCTCCACCCTCTGAGTGAGCTTTGCATGTTCCACTAACCTTGAGCTGGTGGCAGGTGGAGATGCCAGGCAGAACACTAACCTGACCATGGGCGGGGCCCTGCGGTGTCCGCCCCTCAATAAAAGCAATTCCAACCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022565-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=1.000 C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.1),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.8),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=1.7),PF0068115=Plectin=WD(100=1.5),PF0068115=Plectin=WD(100=2.2),PF0068115=Plectin=WD(100=2.2)
Main Inclusion Isoform:
ENSMUST00000165210fB14781
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGTGAGACCCTTCGCC
R:
AGAGGAAGCTCTTCTGCAGGG
Band lengths:
102-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types