MmuEX1020449 @ mm10
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3537451-3537883:+
Coord C1 exon
chr8:3537451-3537520
Coord A exon
chr8:3537627-3537692
Coord C2 exon
chr8:3537767-3537883
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGGGACGTTGTTAACACAAGTGA
3' ss Score
-1.78
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GACCTGTGGCTGCCTTACTTCAATGTGACCACAGACATCACTGCCTCTGCCATGCGCGTCCACAAAGATG
Seq A exon
TGACCGTCCACCTGGGCCCGTCCACCGATCACTAACCATCACCCACTAATGTCCCGAAGGCCCCAG
Seq C2 exon
GCTGCGTGTGGCGTTACGTCCGGGCCAGTGCCTCCTACTGTCCCTACCTGCCCCCACTCTGCGACCCCAAGGACGGGCACCTGCTGGTGGACGGGTGTTACGTTAACAACGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565-'54-58,'54-57,55-58
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=FE(13.8=100)
A:
PF0173417=Patatin=PD(1.6=16.7)
C2:
PF0173417=Patatin=FE(23.4=100)
Main Inclusion Isoform:
ENSMUST00000207421fB14885
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGCTGCCTTACTTC
R:
TAACGTAACACCCGTCCACCA
Band lengths:
175-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types