MmuEX1020450 @ mm10
Exon Skipping
Gene
ENSMUSG00000004565 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:MGI Symbol;Acc:MGI:1354723]
Coordinates
chr8:3521508-3522181:+
Coord C1 exon
chr8:3521508-3521667
Coord A exon
chr8:3521919-3522003
Coord C2 exon
chr8:3522101-3522181
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTCTAATAATATAGAAA
3' ss Score
3.1
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GGTGCTAGGTCACTTTGAGAAGCCGCTCTTCCTGGAGCTCTGCCGGCACATGGTCTTCCAGCGTCTCGGGCAGGGGGACTATGTTTTTCGGCCCGGTCAACCAGATGCCAGCATCTATGTGGTTCAAGATGGGCTGCTGGAGCTCTGCCTACCAGGGCCT
Seq A exon
AAATATCAGAGGACCGAGTGGCCATTTGGGAAGATCCAACAGATGGGCAGAGAGTGATGTGCAGGAAACAGCAACTGGTTAGGAG
Seq C2 exon
GATGGGAAGGAGTGTGTGGTGAAGGAGGTGGTTCCTGGAGACAGCGTCAACAGCCTTCTGAGCATCCTTGATGTCATCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004565_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(34.7=63.0)
A:
PF0002724=cNMP_binding=PD(20.0=47.4)
C2:
PF0002724=cNMP_binding=FE(26.5=100)
Main Inclusion Isoform:
ENSMUST00000111070fB14886
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTTTGAGAAGCCGCTCT
R:
TCACCACACACTCCTTCCCAT
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types