MmuEX1020453 @ mm10
Exon Skipping
Gene
ENSMUSG00000036833 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:MGI Symbol;Acc:MGI:2385325]
Coordinates
chr2:25021942-25029656:+
Coord C1 exon
chr2:25021942-25022011
Coord A exon
chr2:25022624-25022720
Coord C2 exon
chr2:25029507-25029656
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGTCTCTTCCACTAGTTC
3' ss Score
9.25
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTTGTAACGCGACTGATTCATCTCTTGGGCGAGAAGATCTTAGGCAGTCTCCAGCAGGGATCTGCAACAG
Seq A exon
TTCTCAAGGCTAGCTCTTTTGTGGCCTGTCCCTCTGCATATTTACATCTGAGACTGGTGTACTGACCTGAGTGTTTGCTGAAAGGACAGATTCACAG
Seq C2 exon
GTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGGAACCCGCCTGGCAATCTGTCCACAGTGGCAGCACTGCCTGCTTCTGAGGATGTGCCCCTAACCGCCTTTGCTCTGGAGCTCCAACATGCCCTCAGTGCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036833-'42-41,'42-40,43-41
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000045295fB14889
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGGCAGTCTCCAGCAGG
R:
GATGGCACTGAGGGCATGTTG
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types