RnoEX0067754 @ rn6
Exon Skipping
Gene
ENSRNOG00000008190 | Pnpla7
Description
patatin-like phospholipase domain containing 7 [Source:RGD Symbol;Acc:708466]
Coordinates
chr3:2228947-2237496:+
Coord C1 exon
chr3:2228947-2229016
Coord A exon
chr3:2229652-2229820
Coord C2 exon
chr3:2237347-2237496
Length
169 bp
Sequences
Splice sites
3' ss Seq
TATGTTTCCTCTTCCTCTAGTTC
3' ss Score
9.98
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GTTGTAACCCGACTGATTCATCTCTTGGGTGAGAAGATCTTGGGCAGTCTCCAGCAGGGATCTGGGACAG
Seq A exon
TTCTCCAGGCTAGCTCACTTGTGTCCTGTCCCTCTGCGAGTATAAGCTTCCACTAGTTCTCCAGGGTAGCTCACTTGTGGCCTGTCCCTCTGCGTATATAAACTCTACATCCGTTGTCACATCTGACCCTGGTTTACCGAACTGAATGTTTGTAAGGACAAATTCACAG
Seq C2 exon
GTCACCAGCTTGGATTTAACACAGCAAGCAGCAAATGGGACTTGGGAAACCCCCCTGGCAACTTGTCCACGGTGGCAGCAATGCCTGTCTCTGAAGATGTGCCCCTAACTGCCTTTGCCCTGGAGCTCCAGCATGCCCTCAGTGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008190_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000011633fB11003
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAACCCGACTGATTCATCTCT
R:
CAATGGCACTGAGGGCATGC
Band lengths:
218-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]