MmuEX1020616 @ mm10
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69735989-69743780:+
Coord C1 exon
chr2:69735989-69736128
Coord A exon
chr2:69741486-69741693
Coord C2 exon
chr2:69743613-69743780
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGACTCTTTTGTTTTTAAAGTTA
3' ss Score
5.11
5' ss Seq
AAGGTCTTT
5' ss Score
2.08
Exon sequences
Seq C1 exon
GCATCATGTTGTTTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATTGAAAACCAGAAAACAGATGCCGCTAGCAAACCATTTGCTGAAGTTCGGATACTCAGTTGCGGAGAGCTGATTCCAAAGTCTAAGG
Seq A exon
TTAAGAAAGAAGAAAAGAAAAGGCATAAGTCCTCGTCCTCCTCCTCCTCCAGTGACTCAGACAGCTCAAGCGATTCTCAGTCCTCCTCTGAGTCTTCTGATTCTGAAAGCGCTTCCGAAGAAAAATCCAGAAAAAGGAAAAAGAAACATAGGAAAAATTCCCGAAAGCATAAGAAGGAGAAGAAGAAGCGAAAGAAAAGCAAGAAAAG
Seq C2 exon
CCCATCTAGTGAAAGTGAAGCAGAAAATGTTGATGCACAGCCCCAGTCTACTGTCCGTCCAGAAGAGATCCCTCCTATACCAGAAAATAGATTTCTAATGAGAAAAAGTCCTCCTAAAGCCGATGACAAGGAGAGGAAAAACAGAGAGAGAGAAAGAGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-'18-33,'18-30,24-33
Average complexity
S
Mappability confidence:
91%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=83.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAAGTGATCTCTGGTCA
R:
ACTCTCTTTCTCTTTCTCTCTCTCTG
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types