RnoEX0068613 @ rn6
Exon Skipping
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55972761-55981184:+
Coord C1 exon
chr3:55972761-55972900
Coord A exon
chr3:55978759-55978966
Coord C2 exon
chr3:55981017-55981184
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGAATCTTTTGCTTTTAAAGTTA
3' ss Score
5.08
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GCATCATGTTGTCTTTGGGCAAGTGATCTCTGGTCAGGAAGTTGTGAGAGAGATCGAAAACCAGAAAACAGATGCTGCTAGCAAACCGTTTGCTGAGGTTCGGATACTCAGTTGTGGAGAGCTGGTTCCCAAGTCTAAGG
Seq A exon
TTAAGAAAGAAGAAAAGAAAAGGCATAAGTCATCATCTTCGTCGTCGTCCAGTGATTCAGATAGCTCAAGTGATTCTCAGTCCTCCTCTGATTCTTCTGATTCTGAAAGCGCTTCTGAAGAAAAATCCAGAAAAAGGAAAAAGAAACATAGGAAAAATTCCCGAAAGCATAAGAAGGAGAAGAAGAAGAGAAAGAAAAGCAAGAAAAG
Seq C2 exon
CCCGTCCAGTGAAAGTGAAGCAGACAATGTTGATGCACAGCCCCAATCTACTGTCCGTCCAGAAGAGATCCCACCTATACCAGAAAACAGATTCCTAATGAGGAAGAGTCCTCCTAAAGCTGATGACAAGGAAAGGAAAAACAGAGAGAGAGAAAGAGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-'14-19,'14-17,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(24.1=83.3)
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000010216fB11153
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAAGTGATCTCTGGTCA
R:
ACTCTCTTTCTCTTTCTCTCTCTCTG
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]