MmuEX1020997 @ mm10
Exon Skipping
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64110632-64112624:+
Coord C1 exon
chr14:64110632-64110879
Coord A exon
chr14:64111333-64111407
Coord C2 exon
chr14:64112482-64112624
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTGTGACGTGTCCTTTACAGAAG
3' ss Score
9.06
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
Exon sequences
Seq C1 exon
CTCTAAATTGGAGATCATTCATGGCACTGAAGACCTCAGCACAAAGGGCATAAAGTATCAGAAAGTGGACAAGTTATTCTTGCACCCAAAGTTTGATGACTGGCTCCTGGACAACGACATAGCTTTGCTCTTGCTCAAATCCCCATTAAACTTGAGTGTCAACAGGATACCTATCTGCACTTCAGAAATCTCTGACATACAGGCATGGAGGAACTGCTGGGTGACAGGATGGGGCATTACTAATACTA
Seq A exon
AAGCCAGCAACAGTCCACTTCTAGACCCCCTTCCCAGCCACTCCTGCCAACTAATCGCATTTGTCCATCTTCTTG
Seq C2 exon
GTGAAAAAGGAGTCCAACCCACAATTCTGCAGGCAGTCAAAGTGGATCTGTACAGATGGGATTGGTGTGGCTATATTTTGTCTCTATTAACCAAGAATATGCTGTGTGCTGGGACTCAAGATCCTGGGAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
PF0008921=Trypsin=FE(9.9=100)
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
ENSMUST00000022537fB15262
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGACAACGACATAGC
R:
CCTGCAGAATTGTGGGTTGGA
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types