MmuINT0127542 @ mm10
Intron Retention
Gene
ENSMUSG00000021966 | Prss52
Description
protease, serine 52 [Source:MGI Symbol;Acc:MGI:1920632]
Coordinates
chr14:64110632-64112624:+
Coord C1 exon
chr14:64110632-64110879
Coord A exon
chr14:64110880-64112481
Coord C2 exon
chr14:64112482-64112624
Length
1602 bp
Sequences
Splice sites
5' ss Seq
CTAGTACGT
5' ss Score
6.23
3' ss Seq
TTGCTTCTCCTCTGGCTCAGGTG
3' ss Score
8.51
Exon sequences
Seq C1 exon
CTCTAAATTGGAGATCATTCATGGCACTGAAGACCTCAGCACAAAGGGCATAAAGTATCAGAAAGTGGACAAGTTATTCTTGCACCCAAAGTTTGATGACTGGCTCCTGGACAACGACATAGCTTTGCTCTTGCTCAAATCCCCATTAAACTTGAGTGTCAACAGGATACCTATCTGCACTTCAGAAATCTCTGACATACAGGCATGGAGGAACTGCTGGGTGACAGGATGGGGCATTACTAATACTA
Seq A exon
GTACGTGACTCCAGATTGGATATACAGGGTGGCATGTGGCTGGTGTTCAGAAGGATTAGAAAATTCTAGAAGCTCTGCTGGCCTTGAAATTCTGCCTAGTGGATATGATGACTTCAGCTCTCACTGAAGGCCCATGACATAACATGTCCTCAGTACCCCCAAGGCTGACTAGCCTTCATAAAACTTTGGGGACCTGGAACAAATTGTGTGCTTATGCTATAGAACATGAGCCCTGGGCAGAACCTCTGGGGAAACCAAGGCTGAAAGGTTACTCAGTAGAATTCTGAGGGACCATGAAAGGACACAGGGCAGCAGTATATACTGACTCGGCTCCACATGATGATATCTGTATTGCTTTTGTAAAGTCAAGGTCTCTAACTTTTTGAAAGCCATAGATTCAGGCCAGGGGGGGGGGGGTAAAAATCAGCTAAGTCTGTGACGTGTCCTTTACAGAAGCCAGCAACAGTCCACTTCTAGACCCCCTTCCCAGCCACTCCTGCCAACTAATCGCATTTGTCCATCTTCTTGGTAAGCATGCTGTCTTAGGGTTTCACTGCTGTGAAGAGACACTGTGATGGAGGCAGCTCTTACAAAAGGCAAACATTTAACTGAGGCTGTCTTATGGTTTCAGAGGTTCAGTCCATTATCACCATAGTAGGAAGCATGGTGGCATCCAGGCAGACACATTGCAGGAGAAGGAATCGAGAGTTCCACATCTTAATCCAAGGGCAGCCAGGAGACTCTGGCAGTGGAGAGGAGGAGGTTTTCTTTCACACAGGGTGGGGCTTGAACTAGGAGTCCTCAAATCCTGCCTACACAGTGACATACTTCCTCCAAGAAAACCACACCTATTCCAACAAGGTCACACCTCCTAATAGTACCACTTCTTGTGGGCTAAGCATATTCAAACCACCACAGCATGTCTTGTTCCATAATCAATTAGCAGGGGACATTTTGCAGGTCATGCTCTTCCTCCATGCAAGTCCTTATGTGGATGGACCTGTGTTCTAATGCTGTTCCAAAGTCCCAGTCTGGGTGGGAGTCAGTCACTGATGATTTTATGAGCTTAAGAGAAAGAAAGAAAAACAAAACAAAACAAAGTTTTTAACCCCAAAGTCCTCAGATATCATTCCTTCAACACATATGCTTTGACCTTTTCTCTGCTCTGGAAGCATTCTAGACACAAGATTTGACAATACCTAAAGAGAAAGAAAGCATCCACCCCTTGGGTGGTGAGCTCCTACTTGGTGAATGTCTCAAGGGTCCTAGAGTGTTACAAGCCCCTCTATCTGCCTCAGTTTTCTTGATCATCATGCATTCAAACAAAACACGTTTCTAGGACTCCAGCTGGGGCTCGTGCCTACTTAGGGCTGGAAGATGCTGAACTCAGGCCGAGACTTAGCAGGGATCTAGTACTAGGGAACTATGGATGCCTGGGGGATCTTGACAGTCTTCGAGATACCTATCTCTCTCCCACATTTGATTGGTCTCTGGGTGAGCAAAAGTTCTTTTGTCATTGGTGTGATATGGATGGGTACTGACACTCAACTCAGGGCCATTTTCCCTGAGACTCTCTCTTCTTTTGCTTCTCCTCTGGCTCAG
Seq C2 exon
GTGAAAAAGGAGTCCAACCCACAATTCTGCAGGCAGTCAAAGTGGATCTGTACAGATGGGATTGGTGTGGCTATATTTTGTCTCTATTAACCAAGAATATGCTGTGTGCTGGGACTCAAGATCCTGGGAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021966:ENSMUST00000022537:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACCTCAGCACAAAGGGC
R:
AGGATCTTGAGTCCCAGCACA
Band lengths:
345-1947
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types