RnoINT0083397 @ rn6
Intron Retention
Gene
ENSRNOG00000047632 | LOC683422
Description
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor) [Source:RGD Symbol;Acc:1586868]
Coordinates
chr15:47472103-47473924:+
Coord C1 exon
chr15:47472103-47472350
Coord A exon
chr15:47472351-47473781
Coord C2 exon
chr15:47473782-47473924
Length
1431 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TTGCTTCTCCTCTGGGTCAGGTG
3' ss Score
8.09
Exon sequences
Seq C1 exon
CGCTAACTTGGAGATCCGTCATGGCAGAGATGACCTCAGCACAAAGAACGTGAAGCATGAGAAAGTGGACAAGTTGATCTTGCACCCAAAGTTTGATGACTGGCTCCTGGACAATGACATAGCTTTGCTCTTGCTCAAATCCCCATTAAACCTGAGTATCAACGGGATACCTATCTGCACTTCAGAACTCTCTGACTTACGGATATGGAAGAACTGCTGGGTGACAGGATGGGGAATTACTAATGTTA
Seq A exon
GTAAGTGACTCCAGATTGTATGTACAGGGTGACATGTGACTGGTGTTCAGAAGGATTAGAAAATTCTATAAGCTCCGCTGGCCTTGAAATTCTGTGTAGTGTATCTGGTGACTTCAGTTTTCACTGAAGGCCCATGGCATAGCATGTCCTCAGTCCCCCAAGCAGTCAGCCTTCATGAGGCTTCCGGGACCTGGAGCAAATTGTGTGCTTATGCTATAGAACATGAATTCTGGACAGAACAGAACATTGAGGCCAAAGGGTTACTCAGTAGAATCCTGAGGGACTATGGAAGGACACAGGACAGCAGTGTCCTTTCTTTATAGAAGCAAGCAACAGTCCACTTCTAGATTCCTTCTCAGCCACACCTGCAAACAACCTGTTGTCTTAGTTAGGGTTTCATTGCTGTGAAGAGACACCATGATGACGGCAACTCTTACAAAAGGCAAATATTCAACTGGGGCTGGCTTACGGTTTCAGAGGTTCAGTCCATCGTCATCATAGTGGAAACACAGCAGTGTGGAGGCAGTCGCAGTGCTGAAGAAGAAGCCGAGAGTTCCACATCTTAATCCAAGGGCAGACAGAAGGAGACTCCTTAGCAGGCAGCAGGGAGGAGGGGCTCTTCCACACGAGGAGCCCTCAAAGCCTGCCTACACAGTAACACACTTCCTTCAGAAGACCACACCTACTCCAACAAGGTCACATCTCCTAATAGTCCCACTTCTCATGGACTAAGCATATTCAACCACCACAGTATGACTTATCCCATAATCAGTCAGCAGGGAATACTTTGCAGGTCATGCTGTTCCTCCATGCAGGTCCGTATGTGGCTGTGACTGTGTTCCAATGTCGTTCCAAAGTCCCAATCTGGGTGGGAGCCAGTCACTGATGATTTTTATGAGCTTAAAAGAAAAAAAGAAAAAACAAAACAAAACAAAATTCTTAACCCCAAAGTCTTCAGGTATCATATATTCAACACATATGCTTTGACCCTTTCTCTGACCTGGAAGCATTCTAGACACAAGATTTGACAGTCCCTAAAGAGAAAGAAAGCTCCTCCTCCTGGGTGGTGAGCTCTTCCTCAGTCAGGGGGCCTAGAGTGGTACAAGCCTCTCTATGGCCTGAGCTCTCTTGACCGTCAAGTATTCAGACGAGACACACTTTCAGGACTCCAGATGGGGCTCATGCCTACTATAGGGTTGGAAGACGCTGAACTCAGGCTGAGATTAAGCAGGGACCTAGTTCCAGGGTACTGCGGATGCCTGGGGGATCTTGACAGTCTTCTAGATAGCTATTCCTCTCCCACATCTGATTGGTCTCTGGGTGAGCAGAAGTTTTTTTGTCATTGGAGTGATATGGATGAGTACTGACATTCAACTTAAAGGGACCATTTTACCTGAGAGACTCTCTCCCTTTGCTTCTCCTCTGGGTCAG
Seq C2 exon
GTGGAGTAAAAGTCCAAACTACAAAGCTACAGAAAGTCCAAGTGGATCTGTTCAGATGGGACTGGTGTGGCTATGTTTTGCCTCTATTAACCAAGAATATGCTATGTGCTGGAACTCCGGATGGTGGGATGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047632:ENSRNOT00000072438:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(36.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCATGGCAGAGATGACCTC
R:
CATCCGGAGTTCCAGCACATA
Band lengths:
355-1786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]