MmuEX1021948 @ mm10
Exon Skipping
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37472295-37473783:+
Coord C1 exon
chr2:37472295-37472514
Coord A exon
chr2:37472932-37473302
Coord C2 exon
chr2:37473579-37473783
Length
371 bp
Sequences
Splice sites
3' ss Seq
GAAGTCTATCCTTTTTTCAGGTG
3' ss Score
9
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
ATTGTAGGAAATGGAAGTGAGCAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGATCCTCCCATGGACGACCAGCCAGGGGAAAGGTCACAACTGGATGGTGAAGGAGATGGGCCTCTTTCTAATCAACTCTCAGCTTCATCCACCATTAATCCTGTGCCTCTGGTAGGGCTTCCGAAACCAGAGATGAGCCTGCCAGTGAAACCTGGACAAGGAG
Seq A exon
GTGGCTTAAAGAGTCTTCCAGGAAATGGAAATCTGATGAGTTCAAATCCAGACATTACTATAAAACCTTGTTTCAGAAAATCAGAAACAACCAAAATTTTCCAGGAAAGAAGAATTTTGATTACGGTGTTAGAAAATAAATGTTTGCTCCAGGCATAACCTCTCAGAATGCAAGGTGGAAGTGGGAGGTACAGAGCAGAAGGCCTGAACAGTTAGGAAAGCTCATCTGCAAGAACAGTTTATTAACTTGGAAGCAGAGTGTTAAAGGATGTAATGAAGAAGCTAGCTGTGTATTGGAAACATTGTAGCTGCAACCAGAAGACATCAGCATTTTCAGAATACTTGGATACTACACATATATTTGGTTTAAAT
Seq C2 exon
ATTCTGAAGTATCAAGTCCTTTTACACCAGTGGCTGATGAGGATAGTGTGGTTTTCAATAAACTAACTTACTTAGGCTGTGCTTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGAGGATGATGTCCATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-'6-10,'6-9,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.442 C2=0.164
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(38.4=69.6)
Main Inclusion Isoform:
ENSMUST00000061179fB15548
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGCTGATGGATCCTCCCA
R:
TTCGGCACTGAGAGGGTTACA
Band lengths:
358-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types