RnoEX0073406 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21724192-21725405:+
Coord C1 exon
chr3:21724192-21724414
Coord A exon
chr3:21724664-21724856
Coord C2 exon
chr3:21725201-21725405
Length
193 bp
Sequences
Splice sites
3' ss Seq
GAAGTCTATCCTTTTTTCAGGTG
3' ss Score
9
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ATTGTAGGGAATGGGAGTGAACAGCAGCTTCAGAAAGAGCTAGCAGATGTGCTGATGGATCCTCCCATGGACGACCAGCCAGGGATGGAAAGGTCACACCTGGATGGGGAAGGAGATGGGCCTCTTTCTAATCAGCTCTCAGCTTCATCCACCATTAATCCTGTGCCCCTGGTAGGGCTTCAGAAACCAGAGATGAGCCTGCCAGTGAAATCTGGACAAGGAG
Seq A exon
GTGGCTTACAGAGTCTTCCAGGAAATTTATGATGAGTTCAAATCCAGCCATTAGTATAAAACCTTGTTTCAGAAAATCAGAAACAACCAAATTTTCCAGGAAAGAAGAATTTTGATGACGGTGTTAGCAATAGATGTTTGCTCCAGGCATAATCTCTCAGAAAGCAAGTTGAAAATGGAAGGATACAGAGCAG
Seq C2 exon
ATTCTGAAGTGTCAAGTCCTTTCACACCAGTGGCTGATGAGGATAGTGTAGTTTTCAATAAACTAACTTACTTAGGCTGTGCCTCAGTAAATGCTCCCCGGAGTGAAGTGGAAGCCTTGAGGATGATGTCTATCTTGAGAAGTCAGTGTCAGATTTCTCTGGATGTAACCCTCTCAGTGCCGAATGTATCTGAAGGAACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=1.000 C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064018=PID=PU(38.4=69.6)
Main Inclusion Isoform:
ENSRNOT00000013378fB12026
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCTGTGCCCCTGGTAGG
R:
TTCGGCACTGAGAGGGTTACA
Band lengths:
252-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]