MmuEX1021967 @ mm10
Exon Skipping
Gene
ENSMUSG00000015087 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25598145-25601398:-
Coord C1 exon
chr2:25601351-25601398
Coord A exon
chr2:25600668-25600767
Coord C2 exon
chr2:25598145-25598197
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATGAGAATTTGTTTTCACAGGCA
3' ss Score
6.22
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
GCAGATGCCCACAAGGCTCTTACCTGACTTGGGTCCTGTTTATAGCTACCTGCTTAGCCCTCTGGCACTGGAGGTGGCCCTAATTATTGAGCTAGACAGT
Seq C2 exon
GAAAGTGTAAAAAACGAGGAGATGGCTTGAAGACGGAAAATGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.722
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
PF0007117=Ras=PD(1.6=3.6)
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
ENSMUST00000058137fB15565
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGATGTAGTGAAAGTTGAAGT
R:
TCCTGGGGGTCATTTTCCGTC
Band lengths:
98-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types