RnoEX0073469 @ rn6
Exon Skipping
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2823571-2824876:-
Coord C1 exon
chr3:2824829-2824876
Coord A exon
chr3:2824113-2824212
Coord C2 exon
chr3:2823571-2823671
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATGAGAACTTGCTTTCACAGGCA
3' ss Score
6.2
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CCACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
GCAGATGCCCACAAGGCTGTTGTCTGATTTGGGTCCAGTTTATAGCTACCTGTTTGGCCCTCTGGCATTGGAGGCAGCCCTAATTATTGAGATAGACAGT
Seq C2 exon
AGTTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGATCTCATTCTCCTTATGTTAGGTCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795-'7-7,'7-6,8-7
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
PF0007117=Ras=PD(1.6=3.6)
C2:
NA
Main Inclusion Isoform:
ENSRNOT00000065410fB12039
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTGATGATGTAGTGAAAGTTGA
R:
AAGACCTAACATAAGGAGAATGAGA
Band lengths:
147-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]