RnoEX0073472 @ rn6
Exon Skipping
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2821555-2824876:-
Coord C1 exon
chr3:2824829-2824876
Coord A exon
chr3:2822442-2822792
Coord C2 exon
chr3:2821555-2821607
Length
351 bp
Sequences
Splice sites
3' ss Seq
GTAGCATTTTACACCCTTAGATG
3' ss Score
4.45
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CCACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
ATGGCCCGGGAACAGTGCAGCAGAGTGACACCTCCACTGCCCAGGAGCCATGGAGGACTTCGCTTCCTGCTATGCTAGACTCACACAACTTCTGCCACACCACCCAGATCTCTGCTCAGGTCCTTGCTCAGCTGCAGTCAGGCCGGATCCCAGCACAGAGTTCCTAACTCAGGGAGTGCCTGCATGGTCATGGCTGCTGTTGCCTCTTCATTGTAGAGGGTTGGGGAGAAAGGACCTTCTGCCTCTCCTCCCTCCCCATCCCCATGATCCAGTGTCTGAGTAGTGTCCACAGCAAGCAAAGGACCTTCAGATGTGAGAGAAGTTAAAGCAACTAAGGGCTCAAGGGCATTG
Seq C2 exon
GAAAATGTAAAAAACGGGGTGACTGCTTGAAGACGGAGAATGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.418 C2=0.667
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
PF0007117=Ras=PD(18.7=25.0)
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
ENSRNOT00000065410fB12040
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]