RnoINT0123490 @ rn6
Intron Retention
Gene
ENSRNOG00000016795 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:RGD Symbol;Acc:1307615]
Coordinates
chr3:2821555-2824876:-
Coord C1 exon
chr3:2824829-2824876
Coord A exon
chr3:2821608-2824828
Coord C2 exon
chr3:2821555-2821607
Length
3221 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTGTCTGTCTTTTAATAAGGAA
3' ss Score
7.08
Exon sequences
Seq C1 exon
CCACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
GTAAGGTACATTATCTCCTTAATGCATGGTAGACTCTAAGGCCCCTCCCCTCCACACCCCTCTTTGCATGTACTGTGCCCATCCATTGCCCCAGGTCTGGTTGTTTTCCTTGGGTCCCATGTCCTGCTTAGCCCTGTCACAGAATCACTTGTGACTCGAGGCATGTCACAAGCACCAGCTTTATCACCTGAAGAATATAGAAAGTTTAGATTCCTGCCAACTGTTAATGTCTGGGTTACATCAGAGTCCCTGTCTGATCCCTTCCCTACCTGCTCTACATTCTGGGTCCTAATCACTTCTATCCCATGTCCGGTAGGCAGAGTAAATGTTCACCCGTGAACCTATCACACACACGTGGCTCTTTTGAGCATTTTGGGAGGGATGGGTATGCTTAAAACTCCGACCTTATAAGCTGTTCCCAAAACCCGCCTGTGTGTTTGCCTGTGTCAGCCCTGTACCCATAGTCACACAGCCCTAGACTCCCAGTGACTTGGCAGCCCTATTCTGAAAGACACAGAAGGGTACCTCTGTCAAATATTCTTTTACTAGGTGATGGCTTGATGTCTGTTGTTTGAAACTGATCGGTGGTCTCTCTAATGAGAACTTGCTTTCACAGGCAGATGCCCACAAGGCTGTTGTCTGATTTGGGTCCAGTTTATAGCTACCTGTTTGGCCCTCTGGCATTGGAGGCAGCCCTAATTATTGAGATAGACAGTGTAAGTACAGTGCACCAGCACAGTGAAAACATGCGGGGCTGCACCACGTGTAAGTGCAGCAGCACAGTAGATTGATGTGGGGCTGCACCACGAGTCCAGAAGACTGGAAGGCAGGGGCAAAGTCAAATGGAGAGAACACATCTTGGGGCAGTACCTTGGTGGGCCCAAGACATCATTCAAACCAATTTCCCACAAACACTTTTAACTGGATTTAGAGAGAAGGCAAGCTGGAGTTGCTTTTGTTACTTCAGCCCATCTCTGTCATTCATGTTTTGTAGGTCAGCAGCCTATATAGAGAGCATTTCTTACAGAATGGGTCACCAAGTCAAAGTACCTAGATAGACCCAGCCACACAGAGACCTCTCCTCATCTAAACCTGCAAAGGGCAACAACAACTCCTCAGAGTACCTTAATGACAGGACCTCTCTCTTTTTTTTCCAGAGTTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGATCTCATTCTCCTTATGTTAGGTCTTAAGTCCCTCTTTGATCCTGGGGTGAGAGCTCATAGTCCTCCCTGGTATGGGCATTGTGTGTGTGCATGCAGACCTCTGACCAAACAGGCACACCATCACCTATTTACCAGCGTAATAAACATGACCATATAGACATCACTGGCCTCATCAGCATGGTTGTGCTGCATGACCTCCAGGTCCAGAACTTTGCGGGAAGATGTGTCTTCAGGGCTCTTATTTTTTTGGCTCAGGGTGTGCTTTCTCCTCCTTCCTCAGCCAAGTTCCTTTTGAGTATGGTTTTGGGCCAAGTATTGAAGAACAGTTGAAGCCAGTTTTTTCTCTGATTCCAGCAGTAATACAGCCTAGTTGGACCCTATCCATTGAGCCTCCCTGATGATCCTGATGTGTCTGTATACCTCTGAGTGTTTGTGTATGCATCTTTGGAGCGTTGATACATGACCTGAAGTCCATCACTGTACACACTGAGGGCAAGAGTCAAATCCTCTGAGGCCATCAAATAACTTAGGCCAGCTGTTCCCCACAAGCCATGACCCCATCAAGTCAAGATGTGGAGCTGCTGCTCCATAGAGGGACCACCCTTTGGAACCTCACTGCCTTCCTAAGCTCTTGCTTCAGCTCTGGTCTGCACATCTGCAATCTGGTGCAGTGGGATTCACTGTCCTATAGAAAGGGTTTTGAAGAGTGGGGTCAGAACTTGGGGCTGGATATCAGATGGGACCATAATGCAGTAGCCTCAGTCTCTCACTCAGGGCCCTTCAGAGTAGCATTTTACACCCTTAGATGGCCCGGGAACAGTGCAGCAGAGTGACACCTCCACTGCCCAGGAGCCATGGAGGACTTCGCTTCCTGCTATGCTAGACTCACACAACTTCTGCCACACCACCCAGATCTCTGCTCAGGTCCTTGCTCAGCTGCAGTCAGGCCGGATCCCAGCACAGAGTTCCTAACTCAGGGAGTGCCTGCATGGTCATGGCTGCTGTTGCCTCTTCATTGTAGAGGGTTGGGGAGAAAGGACCTTCTGCCTCTCCTCCCTCCCCATCCCCATGATCCAGTGTCTGAGTAGTGTCCACAGCAAGCAAAGGACCTTCAGATGTGAGAGAAGTTAAAGCAACTAAGGGCTCAAGGGCATTGGTAAGTTCTCCAGAGGACTAGCCAGGTAGTTGAGCTTAGCAAGCATAAGCTTTGTGGAGGCAGTATGCTCTAGTCGTTGTTCAGAAGCTTTAAAAGGGAAAGTTGAAAGGAAGTAGCCTGGCAAGTCTTTCCCAGGCCTCCCAGCTACTGTTCAACACTTTTCTATTCCACCCCAAGAATAGTTCCCCCAAACACTTTACAACAACTTATAGGAAGACGCTGGTGGGCTAGAGGCTCACACCCTAAATGCCCCACTTGCCATTCAGCCTCTGAGGGTCAGGCTGAATCAATTGCACTAAGGACAGAGGCTGACTCCCCAGGCTGACCTGAGTGTCACAGGCAGTGTCAGGCTGGACTAGCCTCTTCTTTTCTTCCCAGTGTGCCATTGACTTAGTGATACAGGAGAACTGTTTGAGTAACTCAGATTTGGGGTCTCTTTCTCAGCTTTGACCATAACAACCCTTTATCTCAGGCTGTCTCTTAGCCTCCATGAGAATGAGAGCCAGGCTGTCATGAGGAGGGATCCCTTTGCTCAAGGCAGACCTGGATAGGGAGTCTTTCCTGGCCTGTCTGCTCAGACGCTGAGCACTGACTTCCTATCTAGCTCTACCAGCCTAGGCAGTTCACACAGTTCTGTATCTCTCCAAGATGAGCGAGGGGCATCTGGACCTACCAGGAGGTTCTTTTAGATTCAGAGGCTGAGTACAGTGCAGTCCCATGTGGCATTAAGGCATTGTGGCAGGGAGGAGGAGGTCTAAGGAAGGATACTCCCCACGTATGCAAATCCTGGGCCCAACAATTTCATTCCTAATTTTTTGTCTGTCTTTTAATAAG
Seq C2 exon
GAAAATGTAAAAAACGGGGTGACTGCTTGAAGACGGAGAATGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016795:ENSRNOT00000065410:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
NA
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]