BtaINT0121630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039573 | RABL6
Description
Bos taurus RAB, member RAS oncogene family-like 6 (RABL6), mRNA. [Source:RefSeq mRNA;Acc:NM_001076817]
Coordinates
chr11:106354266-106354679:-
Coord C1 exon
chr11:106354632-106354679
Coord A exon
chr11:106354319-106354631
Coord C2 exon
chr11:106354266-106354318
Length
313 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TGTGTCCATCTGTCCTTAAGGAA
3' ss Score
7.73
Exon sequences
Seq C1 exon
CCACTGACGACGTCGTGAAAGTTGAAGTCTGGGATGTAGTCGACAAAG
Seq A exon
GTGAGTCATACCCGTCGAGTTTTCTCTTCCGGCTCTCTCCACCCTGCAGCTGTCTGAGCGGCTCCTCCGCTGCCCCCTCGACCCGGCTCCCGGCAGGCTCACTGTTGGCTCCAGGAGCAGGGGGGCTGGCCGGCGGCCGGGCTCCGTGCCGGCTGTGATGTTGGCTTTGGGTCTGCGGTGGGGGGCGAGCGCCCAGCACTGCCCCGCGGGCATGAGGCCCCTGCCAGGGGCAGGGCGCAGGGAGAAGCCGCCCTGCTCGCGCCGCCCTCGGGCACAGCGCCTCCACCCGTGACTGTGTCCATCTGTCCTTAAG
Seq C2 exon
GAAAATGCAAGAAGCGAGGTGACGGCCTGAAGATGGAGAACGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039573:ENSBTAT00000001237:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
NA
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development