MmuINT0022521 @ mm10
Intron Retention
Gene
ENSMUSG00000015087 | Rabl6
Description
RAB, member RAS oncogene family-like 6 [Source:MGI Symbol;Acc:MGI:2442633]
Coordinates
chr2:25598145-25601398:-
Coord C1 exon
chr2:25601351-25601398
Coord A exon
chr2:25598198-25601350
Coord C2 exon
chr2:25598145-25598197
Length
3153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTGTTTGTCTTTTAATAAGGAA
3' ss Score
5.87
Exon sequences
Seq C1 exon
CTACTGATGATGTAGTGAAAGTTGAAGTCTGGGATGTAGTTGACAAAG
Seq A exon
GTAAGATACATTATCTCCTTAATGCATGATAGACTCTAAGGCCCCTCCCCTTTGCACACACCCCTTATTTGCATGTCCTTGGGTCCCATGTCCTACTTAGCTCTGTCACACAGAGTCACTTGTGGCTCAGAAGCATGTCACAGGCACCAGCTTTATCAAGTCAAAAGAGTATAGGAGGGTTGGGTTTGCTGCCAACTGTTAGCATCTGGCTTACATCAGAGCCCTATCTGATCCCTTCCCTACGTGGACTAAGTTCTGGGCCCTGGTCACTTCCATCCCATGTCTGGTCGGCAGAGTAAATGTTCAACAGTGAAACTGTCACACATACTTTTCTCTTTTGAGCATTTTGGGAGGGATGACCCTTATGAAGCGCTGTTCCCAAAGCCCTCCTGTGTATTTCCTCTTGTGTCAGCCCTGCACCCACAGTCACACTGAGCCCTAGAGTCTTAGTGGCTTGGCAGCCCTGCTCTGAGAGAGACAGAAGGGTACCTCTGTCAGTTGTTCTTTTACTAGGTGATGGCCTAATGCCATGTTGTTTGACAGTGACCAGTGAGTGGTCTCTAATGAGAATTTGTTTTCACAGGCAGATGCCCACAAGGCTCTTACCTGACTTGGGTCCTGTTTATAGCTACCTGCTTAGCCCTCTGGCACTGGAGGTGGCCCTAATTATTGAGCTAGACAGTGTAAGTGCAGTGCACCAGCACAGTAGAAGTGTGCACCCTGAGTGCGGAAGGCCAAGTCAGTGGAGCGAGAGCACACTGGGGCAGCACGTGGGGCGTGCAGGACTTCGTTCAGAGATTGCCCACAAGCAGTTTTAATTGGATTTAGAAAGAAGGCAAGCTGGAGTTGCATGTTCTTACTTGAACCCATCTCTGTCATGCATGTGGTGGAGGTCAGCAACCTCTATGTAGCGTTTCTTACTGAATGGGTCCCCAAGTCAGAGTACCTCGATAGACCCAGCCACACAGAGACCAGCCTCATCTAAACCTGCAGAGGTCAACAGCAGAACTCCTCAGAGTGGCCCTAATGACAGGATCTGATCTCATTCTTCCTATGTTAGGTCTTATGTTCCTCTTTGACCCTGGGGGTAGGAGTTCATAGTCCTCCTTGGTGCTGACATTGTATGTGTGCATGCAGGCCTCTGACCCAACAGGCATAGCATCACCTATTTAGCCACTAGCATAATAAACATGACCTCTGACCTCTTACAACCACTGGCCTCATCAGCATAGCTGTGCTGCATGTCCTCCAGGTACAGGACTTGGCCAGAAGATGTGTCTTCAGGGCTCCGTTTTTTGGTTTTTTTGTTTTGGCACAGGGTGTGCTTTCTTCCCCCTCCTCAGCCAAATCCCTTCTGAGTATGGTTTTGGGCCAAGTGTTGAAGAACAGTTGAAGCCAGTTTTTTCTCTGATTCCAGCAGTAATACAGCCTAGTTGAATCCTATCCATTGAGCCTCTCTGATGGCTTTGGTGTGTCTGTACACCTCTGAATGCTTTTGTGTGCATCTTTGGAGTATTAATAGATGACCTGCTACCTGAAGTCCATCAATGTATACACTGAGGGCAAGAGTCACATCCTCATGAGGCCATCAAGTGACTTACGCCAGCTGTTCTCCACAAACCATGACCCCATTAAGTCAGGCTGTGGACCTGCTGCAGCGCCTTCCTAAGTTCTTGCCTCAGCTGTGGTCTCCACGTCTGCAGTCTGCTGCAGCGGATGCACTGTCCTATAGACAGGGCTTTGAAGAGTGGGGTCAGAACTTGGGGCTGGATATCAGATGGGACAATAATGCAGTAGCCTCAGTCTCTCACTCAGGGCTCTTTGGAGTAGCATTTTACACCCTCAGCTGGCCCAGGAACCGTGCAGCAGAGGCGACACCTCCACTGCCCAGGAGCCATGGAAGACTGATTTCCTGCTGTGCTAGGCTCACACGCCCTCTACCACCCTACTCTGAGATCTCTGCTCAGATCCCTGCTCAGATGCAGTCAGGCTGAATCCCAGCACAGAGGTCCTAACTCTGGGAGTGCCTGCATGGTCACGCCTGCTGCTACCTCTTCACCGTAGAGGGTTGGAAAGAAAGGACCTCTGCCTCTCCTTCCTCCCCCATCCCCATGATCTTGAATAGTGTCCACAGCAAGCAAAGGACCTTTAGATGTGAGAGAAGTTAAAGCAACTAAGGGCTCAAGGGCATTGGAAAGTTCTCCAGAGAACTGGCCAAGCAGTTGAGCTCAGCAGCTCAAGCTTTGTGGAGGCAGAGCTCTCTAGTGCTTGTTCAGAAGCTTTCAAAGGGAAAGCATATTTCCCACAAACCCTTTACAGCAGCTTACAGCAAGATGCTGGTGGGCTAGAGGCTCATGCCCTGATGTGCCACTTGCCATTCATCCCATGATTCAGGCTGAATCATCACTGCCCTGAGCAGAGAGGCTGACCTGACTGAGTGTGACGGGGGCTCAGGAAGGACTGCAGAGTGCTGTGGAGGTTCTGTGTAAGCACATGAACCTGAGTTTGTTCTCAGGAGATAATTTGTCTGCTATGGAATTCCCAAGGTTGTGAAGAGCTCAGTTGGACATTTAGATGAAAAGGAGAAGGGACAGTGATGTCATCTTGTTGTCCCTAGAGTCCAGTGTCAGACTGCTACAGGACCTGTGGTTGTCTGCCAGATAAAAACACTTCAGTTACCATGAACAGGCAGTGTCAGGCTGGACGGACACTTCTCCGAGTGTGCCAGTGTCTTAGTGATGCAGGGACTGTTTAAGGAACTCAGATTTGGTCTCCAAGCTTTGACTGTAGAAACCCTTTATCATGCCATCCCCCACGATTCCATGAGAGCCAGGCTGTCATGAGCAACCCCTTTACTCAAGGCAGACCTGGATAGGGACTCTTCCTTCCCGGCCTGTCTTATCAGCTGCTAAGTGCTGCATTTCCTATCCTGCTCTGCCAGCCTAGCCAGTTCACACAGTTTTGTATCTCTCAAACATGAGTGAGGGGTGTCTGGACCTACCAGGAGGCTCTTTTAGATTGCAAGGCTGAATGGAGTGCAGTCCCACGTGGCATTAAGGCGGGGAGGAGGAGTCTGAGGAAGGATACTCCCCACTTATGCAAATCCTGGGCCCAACCATTTCATTCCTAATTTTTTGTTTGTCTTTTAATAAG
Seq C2 exon
GAAAGTGTAAAAAACGAGGAGATGGCTTGAAGACGGAAAATGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015087:ENSMUST00000058137:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.722
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.9=100)
A:
NA
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types