HsaINT0025586 @ hg38
Intron Retention
Gene
ENSG00000196642 | RABL6
Description
RAB, member RAS oncogene family-like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
Coordinates
chr9:136825779-136828546:+
Coord C1 exon
chr9:136825779-136825826
Coord A exon
chr9:136825827-136828493
Coord C2 exon
chr9:136828494-136828546
Length
2667 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTGTTTGTTTTTAAATAAGGAA
3' ss Score
4.32
Exon sequences
Seq C1 exon
CCACGGATGACATCGTGAAGGTTGAAGTCTGGGATGTAGTAGACAAAG
Seq A exon
GTGAGGCGTCTCTGTTCTGTGTCTGCTTCTCTCTGGGACTGTGTGCTCTGCGCAGAGAGGCTTCCTTTCTTTCCCCCGGCGCCCATGCATCACCCACCATCCTCGTGGACGGTGCCCAGGGTCTTGCTGCTCTGCTCCCCTCCACATCCAGTGGCGACCCCGCAGCGTGGCGCAGCCCCTCCTGTGGCACTGCATGCTTTGCTGCTTTAGCATACTCCCCGTCTCTGAGTGACCGCGTGCACGGTGGCGGCAGGTGCAGCCGGGGGGTGTGCTTTGAGCCCCAAGGCCCAGGGTGCTATTTTGGGAGCCCTCCTCCTGCACTGCCTGGCGGAGTAGCCCAGCACCAGGCGGCCCCCTGCCCATAGCTGAGGACCCAGCTCCTGCGCTCCTGTCCCTGCCAGGGATCCCCAGCCACACAGACCTGCACTCTGGGGACCGTGGGAGGGCAGCACCAGCCCCCGGGGTGTCCTCGACATCGTTGGTCTCCTCCTCAGCCACAAGGTCATGAGTTCCTCTAAGTCCTCAGGGTGGAGCTCATGGCCCTCCCCGGGGCCCATGGTCCGTGTGCATGTGTGGTGTGTGCAGGGCTGGCCACGTGCACGCCCCGGCCTCACAGGCCTGGCTGTGGCCTCGTTACGAGGCTCTGCTGGAAAGGCGGCCGCCGCCTCTGTGTGATGGTGTCTGTTCGGATGGCGCATGCTCCCCTCCCTCCACCTGTGCTTTGTTGGGGTGGGTTTGGCCATGGGGGGTTAGAGGCAGGTGCTCATGCAGTTCCCGCAGGGGTGCTGGGCCCCTGCGGCTCCCACCACATTGCGCTGGACTCTTGTGGCCCGTGCTGACCTGGTGTTCCAGATGCTGTCTCTGCAGAGCTCTGCGTGGTCTCTGGTGTTAGAGAGGTGGCCACCCACCGCCCTATCATTGTCCTCATCCCCACTGTGAGGAGAAGCTATCAGATCTGCCTGTGGCCCCCAGGTGGCTCAGGAAGGGCCGTCCTGACCCCCATCCTGGCCCCTTTCGGAGCTGCAGAGATTTCCTGTGCCTCCAGCTCTGGCTTCCTGGGTCTGTCCTTGGCGTGGAGCGGGCACAGGCTTCCCGTAGACACGGTTGCCCAGAGTGGGGTTCATAACTGGGCACTGTAAAGGGTGTGGTCTCCACGGCTTAGGATGGGCCCCCCCTTCCTGGTGGCCTGCTGTGCCCGGGGCTGGTGTGGAGGCCTGTGGGTGCAGAGGCCGCCTGGCCCTGGGCTTCCTCTGGGGTTACATGTGTACCCTTGCACCCACCTGTTAGCACCCACCGGGAGAGTCTCACTCAGCCTAAACCAGGGCCCCTCAGGAGGAAAAGGTCCCCAGCTTCATGATGGGGCCCAGTGTGCCTTCCATCCCCGCCCTGACTCAGTGCCCACTGTGCGAGGTGTGAGCACTGTCCACAGCAGCCAGGGCGGCCGGTGGGGAGTGCATTGGAGGGGGTTGAGGTCTCTTGGGCACCTGGTGAGTTCTCAAGGGTGAGAGGAAGCCGAGGCCATCAGGCTTAGCTGACGCTGCATGGGGCAGGCTGCCAAGAGGGAGGCTGAATGGAGCAGCCTCAGGTGAGCCGACAATCCTCACCTCCGCCTGGTCAGCCAGGACCCGGCTCCCCTCCAGTCCCGCCTGCTTTCCCCAAAGCAGATCCAGCCAGTCTCAATGGCTCGCCCGGGGGGTGCTGGTTAGGCTGTGAGCATCCTTCCTGGGTGCAGGCCCCCGACAGCCAGCAGTGCTGTGCTGTGTGTGTGTTGGGGACTCTGCTGAGCCCTTTGTGGCCAGACTGGGGAGGCTCCTCCGGGCTGGCTCTGTCCCCTGTACCTTGTGAGGGAGGGGCTGACCCCCTGACTGGGTTACATCGTGGTGAGCAGTTCAGAAACAAGCTGTGGAATGAAGTGGACGTGGCGTTTTAAACACATGAGCCCCATCTGTTCTTAGGGGTTTTGTTTGTTGTCCCAGTCCGTGACTCCAAGACTGGGACCCCCAGAGTTCCCAGGATGGTCTGGAGCCTTTATCCTCAGGTCAGCATTGTGGAGTTAAAGGGAGGGGACCACGGCCCCTCATTCTCAGGAGAGCCATGGTGACCTTGATGGCGGAGGCTCAGGGGGACCTGGACCGTGGACACCACACAGCTGCCCTCCTCCCTCCCGAGGCCATTTCAGGGCTGGAATCCCTGCCCCCCTCTCCTTTCCTCCCGGGCTGGTTGTTGCCTTGAGAGTCCGTGCGCTCATCTCCCCACTTTTACCCCAGGGGGAGGCCCCTCACCTTCCCACCATATCCCTTGTACTTCCTCCCACCCTGGACTTGGGGGAGCTGGGGGGAGGGGGCCCTTCCTTCAGCAGCAAACCCTCCTGGTGTAGGGCTGTAGGCCATCCCACCGCAGCCTGTCCAGGAGCTGCTGAGCCTGTCAGCCCCAACTAGCACCTCCTGTCCAGGCCCGGCCCAGCCCTGCCTCCAGAGCCTACAGAGGGGCCTCGCCCAGGTCCTGCTGCTCCAGAGCTTGTGGGTGCCCACGCTGCAGGCTGTTTGGGGTGGTGGAGTAGAGCACCCGCTGGAGCTGGGGGCTGAGTGGCCATGGGGGGACCATGCTCCTCCTATGGCCCAAGGCCCAGGGGTTCCACCTCGTAATTTTTGTTTGTTTTTAAATAAG
Seq C2 exon
GAAAATGCAAAAAGCGAGGCGACGGCTTAAAGATGGAGAACGACCCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196642:ENST00000436380:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.684
Domain overlap (PFAM):
C1:
PF0007117=Ras=PD(23.7=82.4)
A:
NA
C2:
PF084778=Miro=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development