MmuEX1022228 @ mm10
Exon Skipping
Gene
ENSMUSG00000043639 | Rbm20
Description
RNA binding motif protein 20 [Source:MGI Symbol;Acc:MGI:1920963]
Coordinates
chr19:53677306-53814340:+
Coord C1 exon
chr19:53677306-53677592
Coord A exon
chr19:53792993-53793446
Coord C2 exon
chr19:53813248-53814340
Length
454 bp
Sequences
Splice sites
3' ss Seq
GAATTTTCTTAAAAATGCAGGGC
3' ss Score
4.57
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
AAGGGGACTGGGCACAGGGACCCCGGCCAGTGAGCGCTTGTGTTCCGGGACCGCCCCTCCCGCGCGCTCTTTCGCTGCGAGCCCGGGCCGGTGTCGCCGCGCATGGTGCTGGCAGTAGCCATGAGCCAGGACGCGGATCCCAGCGGTCCGGAGCAACCCGACAGAGATGCCTGCGTTATGCCCGGTGTTCAGGGGCCCTCCGTGCCCCAGGGCCAGCAAGGGATGCAGCCTCTGCCGCCACCGCCACCGCCTCAGCCTCAAGCCAGCCTGCCCCAGATCATCCAAAA
Seq A exon
GGCGGGATTAGCGTGAGACCACCTCCTTCAGACACAGTCTCCGGAGACCGCTGCATGGAGCTAGCCTGGGTGTTGATACGCGAAGAGGCTGAGAACATGAGGCATGAACGTAGACTGATATTGTTTGCCATTTACACTCAGCATGTGTAATGCGGTAGGAATGGCTCTCAGCAGCATGTGACTCTCCTTGCAGACGGTAGGCAGTGCCCAGGACGCTCTTTCTCTCTCGCTGGTTCGCTTGCTCATAGCCCACCCCCCCCCCTCCTCTGCCCCTTCCCAGACTCCTGAGCGCTTGAGTGGACGGAGGCCTGTCATGATTGGCACGCAGAAAGCTGGTAGAATGTTGTTGGAATTTTCTAGGGCGGTACATGTGCGACACCCAAAATGACTCCTAGCTTCGGTGGCCGCAGGTCAGCAGCCCTTCATGCCAGGTGCCCTGGTCTGTTTCTGAAAG
Seq C2 exon
TGCTGCCAAGCTCCTGGATAAGAGCCCCTTCTCGGTCAATAACCAGAACCCTCTGCTCACGTCGCCAGCCAGCGTCCAGCTGGCCCAGATACAGGCTCAGCTCACCCTCCATCGGCTGAAGATGGCACAGACCGCAGTCACCAACAACACTGCAGCGGCCACGGTTCTGAACCAAGTCCTCTCCAAAGTGGCCATGTCCCAGCCTCTCTTCAACCAGCTCCGGCATCCGTCTGTGCTCGGCACCGCACATGGCCCTACTGGGGTGTCCCAGCATGCTGCCTCGGTTCCCAGCGCTCACTTCCCCTCAACCGCAATCGCCTTTTCGCCCCCAAGCCAGACAGGAGGCCCAGGGCCTTCTGTGAGCCTCCCCAGCCAGCCCCCCAATGCTATGGTAGTTCATACCTTCAGTGGAGTGGTACCTCAGACCCCTGCCCAGCCAGCTGTCATCCTTAGCCTTGGGAAGGCTGGGCCTACACCGGCTACTACAGGGTTCTATGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043639_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.800 C2=0.663
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF121713=zf-C2H2_jaz=PU(51.9=3.8)
Main Inclusion Isoform:
ENSMUST00000164202fB15751
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGATGCCTGCGTTATGC
R:
GAGCTGGTTGAAGAGAGGCTG
Band lengths:
347-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types