MmuEX1022229 @ mm10
Exon Skipping
Gene
ENSMUSG00000043639 | Rbm20
Description
RNA binding motif protein 20 [Source:MGI Symbol;Acc:MGI:1920963]
Coordinates
chr19:53793308-53796453:+
Coord C1 exon
chr19:53793308-53793446
Coord A exon
chr19:53795219-53795402
Coord C2 exon
chr19:53796353-53796453
Length
184 bp
Sequences
Splice sites
3' ss Seq
TGCATTCTCCATTCTTACAGACA
3' ss Score
8.4
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATTGGCACGCAGAAAGCTGGTAGAATGTTGTTGGAATTTTCTAGGGCGGTACATGTGCGACACCCAAAATGACTCCTAGCTTCGGTGGCCGCAGGTCAGCAGCCCTTCATGCCAGGTGCCCTGGTCTGTTTCTGAAAG
Seq A exon
ACATAAAGTTGAGGCATTTGTTTCTGTCAGCACCATGACATCTGTGCAGCTGGAGGTTTGAAAGATTCTAGGATGTAGAAGATGTCTTCAGAGTACTTCTCAGTCAGCCTTTGCTTCACAGAGCTCCCCTGGGCAGCTGTTAATAGCCCAGTGCTGGGCCTCGGGATACTAACAGTCTTTGGAG
Seq C2 exon
GGGTCATAAATGACTGCTTACAGAAGATAACATCCTAAACCCAGAAGGCACAGAGAGACGAAATGTCTCATCGGACCCTCTCATTTTACTAGAGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043639-'6-5,'6-4,7-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGCACGCAGAAAGCTG
R:
CCTCTAGTAAAATGAGAGGGTCCG
Band lengths:
234-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types