MmuEX1023039 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80072357-80082726:-
Coord C1 exon
chr10:80082615-80082726
Coord A exon
chr10:80079953-80080122
Coord C2 exon
chr10:80072357-80072518
Length
170 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCTTCCTTTGCAGCCG
3' ss Score
10.52
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACAGTTCGTGGGTTCCACCCCATTCCTTGGTGGCCAGTCTTGCCCTGAAACCAGCTACCCCACCACAGCCACCGTCCCCAGCTTCTTCTCCAAGAGCAGCGACTTTCCTCAG
Seq A exon
CCGGCCCCAGCCCTCAGCCTCCTACTTCTACAAGGGAAGGGCCCGTGCACTCCTGCTCAGCCCTCCATCTCCAGGTGGCATGGAGCCCTCCCCATAGGCTCTGATAGCCCTGCTCGGTGACCGGAACAGCTCCACAGTCCCCTGTGGGAATACCCACCCTGGGCGTGCAG
Seq C2 exon
GACCCCTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCTTCATCTGTGGATTCCCTGTCAGACATCCCAGACACACCTGACTTCCTGCAGGCTGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCAACTACCCATGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673_MULTIEX1-2/4=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.276 A=0.203 C2=0.356
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000219260fB16274
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCACCCCATTCCTTGGTG
R:
GTGGTGCTGACATCCCAGATG
Band lengths:
244-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types