RnoEX0078225 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12490967-12501803:+
Coord C1 exon
chr7:12490967-12491078
Coord A exon
chr7:12493573-12493741
Coord C2 exon
chr7:12501642-12501803
Length
169 bp
Sequences
Splice sites
3' ss Seq
AGCCCTGCCTTCCTTTGCAGCTA
3' ss Score
10.72
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACAGTTCGTGAGCTCCACCCCATTCCTTGGTGGCCAGTCTTGCCCTGAAACCAGCTACCCCACCACAGCCACCGTCCCCAGCTTCTTCTCCAAGAGCAGCGACTTTCCTCAG
Seq A exon
CTAGCCCCAGCCCTCGACCTCCTGCTTCTCCGAGGACAGGGCCCGTGCACTCCTGGTCTGCCCTCCATCTCTGGTGGCATGGAACCCCTTCCCATGGGCTCTGATGGCCCTGCTTGGTGACCAGAACAGCTTCACAGTCCCCTGTGGGATACCCACCCTGGGCGTGCAG
Seq C2 exon
GATCCTTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCCTCGTCTGTGGATTCCCTGTCAGATATCCCAGACACACCCGACTTCCTGCCGGCCGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCCACCACCCGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987_MULTIEX1-5/6=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.265 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTCCACCCCATTCCTTG
R:
GTGGTGCTGACATCCCAGATG
Band lengths:
247-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]