RnoEX0078221 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12471824-12501803:+
Coord C1 exon
chr7:12471824-12471916
Coord A exon
chr7:12487360-12487532
Coord C2 exon
chr7:12501642-12501803
Length
173 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTTCTCCTACTACAGGAT
3' ss Score
7.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CGCCAAGATGGCGTCCAGAACCCGGAAGTGAGCGGCGGCCGCTGAGAGGCTCCGGGAAACTGAGGCGTCGCGGGCTCAGCGACCAGGTCTGAG
Seq A exon
GATATGACATTACAACTGCTGCCAGCACCACAGAGTGAGCAGCCTCGATAGCCGCCACCCGAGGGTGGCGGAGCGCCGCCTCCACCTGCCTGATGCTGGCAGTGGAACCCACCATGGATGGGGACTTCCCTCCACATGAGCTCCCTCCCCCCGGAGGTGGCATCCAGCTCCAG
Seq C2 exon
GATCCTTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCCTCGTCTGTGGATTCCCTGTCAGATATCCCAGACACACCCGACTTCCTGCCGGCCGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCCACCACCCGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987_MULTIEX1-1/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.840 C2=0.324
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGCGTCCAGAACCC
R:
GTGGTGGAGGTGGTGCTGA
Band lengths:
242-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]