HsaEX0056333 @ hg38
Exon Skipping
Gene
ENSG00000064932 | SBNO2
Description
strawberry notch homolog 2 [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr19:1149369-1174283:-
Coord C1 exon
chr19:1174172-1174283
Coord A exon
chr19:1154184-1154402
Coord C2 exon
chr19:1149369-1149442
Length
219 bp
Sequences
Splice sites
3' ss Seq
GTCCCCGTCTCCCTCTGCAGATC
3' ss Score
13.01
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGCGCGGGGCCCCCAAGATGGCGCCCGAAACCCGGAAGTGAGCGGCGGCAGCTGCGAGGCTCGGAGAAACAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGCCCGAG
Seq A exon
ATCATGATGCTGCCGCCACCGCCGCCACCACGGAGCGAGAAGCCCAGATAGACGCCCCGGCGGCCCCGGGTCCTGGAGTCCCGCCGCCTGCTGCCCGGCCGAGGACCCCACCCCGCCTGCCGCCCGATGCTTGCAGTGGGGCCCGCCATGGACAGGGATTACCCGCAGCATGAACCCCCGCCGGCGGGCAGCCTCCTGTACAGCCCGCCGCCCCTGCAG
Seq C2 exon
AGCGCCATGCTGCACTGCCCCTACTGGAACACCTTCTCGCTGCCGCCATACCCTGCCTTCTCCAGCGACAGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064932-'0-4,'0-3,9-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.581 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATGGCGCCCGAAACC
R:
CGGCTGTCGCTGGAGAAG
Band lengths:
172-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development