DreEX0007720 @ danRer10
Exon Skipping
Gene
ENSDARG00000016188 | SBNO2 (1 of 2)
Description
strawberry notch homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29158]
Coordinates
chr22:17730430-17756235:-
Coord C1 exon
chr22:17756054-17756235
Coord A exon
chr22:17735241-17735406
Coord C2 exon
chr22:17730430-17730509
Length
166 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTTGTGTGCTCAGGTC
3' ss Score
10.06
5' ss Seq
ATGGTAACC
5' ss Score
5.31
Exon sequences
Seq C1 exon
CGCGAGTGCAGTCAGACGTGTCAGAAAAGTCAGCCGCGGAAGTATCGGTTTTCACTTCAACATGGCTTCAAGTGTGACGAGTTGAGATCAGAAGACCAGGAATATTCTTTTTGTTACGAGTCCCAAGGCGTCAAACAAGGGAAAAGACGAGGGAAATATATTCAAGAGCCGCTTTTAGTCAA
Seq A exon
GTCATGTTGGAAAGACGTTGACCGGATCGCGAGATTTATCTGACATGTACGAGACTTCAGTCTGATGCCCTCACTCTCCATTCCGCCTGCCATGGACGGGCACAGCTTCTCTAATTCGGTTGGGCCTCAGCTGGACGCCAGGGGCTTCGTCCTGGCAACTCCAATG
Seq C2 exon
AGCCACGTGTTTGCTAACAACCATTGGAGCTTCCCCAATCAGCCCTTCGGCTTGCCCTGTCCTGCTCAATCTGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016188-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.265 C2=0.259
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCAGTCAGACGTGTCAG
R:
GATTGAGCAGGACAGGGCAAG
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]