BtaEX6040260 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020780 | SBNO2
Description
Bos taurus strawberry notch homolog 2 (Drosophila) (SBNO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001077911]
Coordinates
chr7:45233953-45247465:-
Coord C1 exon
chr7:45247391-45247465
Coord A exon
chr7:45236603-45236794
Coord C2 exon
chr7:45233953-45234026
Length
192 bp
Sequences
Splice sites
3' ss Seq
ACATGCCTGTCTTTCCCCAGGTC
3' ss Score
12.27
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAGCGCTGCCGCGGCGAAGCTCGGAAAAACGGAGGCGCCGCGGGCTCCGCGCCCGGCCGGACCCGGGTCCGAG
Seq A exon
GTCATGATGCCACCACCGCGGAGCAAGAAGCCCAGATAGCTGCCCCTGCAGCCTGGCTCCTGGAGCCCCCTGATGCTGGCAGTGGGGCCCGCCATGGATGGGGAGCTCCCTCCGCACGAGGCCCCGCCAGCTGGCAGCGTCCTATACAGCCCGCCGCCGCTGCAGACCCCACTGTGTGGGCCCAGCGTCCAG
Seq C2 exon
GACACCATGCTGCACTACCCCTGGTGGAACAGCTTCTCGCCCACGACATACCCAGCCTTCTCCAGCGAAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020780-'2-2,'2-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCTCGGAAAAACGGAGG
R:
CTTTCGCTGGAGAAGGCTGG
Band lengths:
130-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]