MmuEX6049739 @ mm10
Exon Skipping
Gene
ENSMUSG00000035673 | Sbno2
Description
strawberry notch homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:2448490]
Coordinates
chr10:80084241-80102721:-
Coord C1 exon
chr10:80102610-80102721
Coord A exon
chr10:80086257-80086432
Coord C2 exon
chr10:80084241-80084314
Length
176 bp
Sequences
Splice sites
3' ss Seq
GGCTTCCTCTCCCACCACAGGAT
3' ss Score
9.02
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGCGGAAGTGCGCGCCGCCGGCAACATGGCGCCCAGAACCCGGAAGTGAGCGGCGGCCGCTGAGAGGCTCCGGGAAACCGAGGCGTCGCGGGCTCAGCGATCAGGTCTGAG
Seq A exon
GATATGACATTACAACTGCCGCTGCCAGCACCACAGAGTAAGCAGTCCAGATAGCCGCCACCCGAGGGTCGCGGAGCGCTGCCTCCACTTGCCTGATGCTGGCAGTGGAACCCACCATGGATGGGGACTTCCCTCCACATGAGCTCCCACCCCCTGGAGGTGGCATCCAGCTACAG
Seq C2 exon
AACCGACTCCTGCACTGTCCTTGGTGGGGCAGTTTCTCACCGTCTTTGTACCCCACCTTCTCCAGTGAAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035673-'3-13,'3-8,13-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.852 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGGCGCCCAGAACC
R:
GTTTTCACTGGAGAAGGTGGGG
Band lengths:
162-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types