RnoEX0078226 @ rn6
Exon Skipping
Gene
ENSRNOG00000013987 | Sbno2
Description
strawberry notch homolog 2 [Source:RGD Symbol;Acc:1307194]
Coordinates
chr7:12493573-12501803:+
Coord C1 exon
chr7:12493573-12493741
Coord A exon
chr7:12496347-12496518
Coord C2 exon
chr7:12501642-12501803
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCCTTGGCCCCTAGATC
3' ss Score
10.55
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CTAGCCCCAGCCCTCGACCTCCTGCTTCTCCGAGGACAGGGCCCGTGCACTCCTGGTCTGCCCTCCATCTCTGGTGGCATGGAACCCCTTCCCATGGGCTCTGATGGCCCTGCTTGGTGACCAGAACAGCTTCACAGTCCCCTGTGGGATACCCACCCTGGGCGTGCAG
Seq A exon
ATCGCCTTTGCCTGATAGCCCACATGCCTGGCCTCCAGGGGCTGTGAGGGGCAGAGTGTCCCCACATCCATGACTGGAGACCCTCTCCTGCCATTCCTGAGTGTACCTCCTCATGCCCACCTGACTCTGACCCCTGGGAGCACCTCAGCCCTCCCTGTACCTCACAGTTGCG
Seq C2 exon
GATCCTTCATGCCTCGAGGACCTCTCCAATGCCTCTGTCTTCTCCTCGTCTGTGGATTCCCTGTCAGATATCCCAGACACACCCGACTTCCTGCCGGCCGACAGCCTCAACGAGGTGCCTACCATCTGGGATGTCAGCACCACCTCCACCACCCGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013987_MULTIEX1-6/6=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=0.000 C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000068197fB12919
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCTGGTGGCATGGAACC
R:
GTGGTGCTGACATCCCAGATG
Band lengths:
247-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]