MmuEX1023135 @ mm10
Exon Skipping
Gene
ENSMUSG00000007279 | Scube2
Description
signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
Coordinates
chr7:109806043-109808570:-
Coord C1 exon
chr7:109808409-109808570
Coord A exon
chr7:109807911-109808115
Coord C2 exon
chr7:109806043-109806240
Length
205 bp
Sequences
Splice sites
3' ss Seq
GCCCCTGAACCCCACTCCAGCTC
3' ss Score
4.42
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTCAATGCTCGCCTGGGCATTTCTACAACACCACCACACACCGATGTATCCGATGCCCACTAGGGACATACCAGCCTGAATTTGGAAAAAATAATTGTGTTTCCTGCCCGGGCAATACTACCACCGACTTTGATGGCTCCACCAACATAACACAGTGTAAAA
Seq A exon
CTCCCCGTTCTTACAGCTGTACTTTTCCCTGGAGGATAATTTTAGTTCAGCCTAGCTCAACACACATTGTCTGAGGGCCTGCCCTGTGCCCAGCAATCCTGCAAAGTCAGCCTGGCCAAGCGACCAGGAGTCAAGCTGTAGAGCTACAGGAGGAGCAAGTGACCGTTCTGTAGAGGAAGGAGAACATGGAAGGAGGATGGATCAG
Seq C2 exon
ACAGAAAGTGTGGAGGGGAGCTGGGGGATTTCACAGGGTATATTGAATCCCCAAACTACCCTGGGAACTACCCAGCCAACTCAGAGTGCACCTGGACCATCAACCCACCCCCCAAACGCCGGATCCTGATTGTGGTCCCTGAGATCTTCCTGCCCATAGAGGATGACTGCGGTGACTACCTGGTGATGCGGAAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007279_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076998=GCC2_GCC3=WD(100=87.3)
A:
NO
C2:
PF0043115=CUB=PU(57.3=94.0)
Main Inclusion Isoform:
ENSMUST00000007423fB16339
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCTGGGCATTTCTACAAC
R:
GCAGGAAGATCTCAGGGACCA
Band lengths:
307-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types