MmuEX1023862 @ mm10
Exon Skipping
Gene
ENSMUSG00000046329 | Slc25a23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:MGI Symbol;Acc:MGI:1914222]
Coordinates
chr17:57043711-57047336:-
Coord C1 exon
chr17:57047186-57047336
Coord A exon
chr17:57046905-57047007
Coord C2 exon
chr17:57043711-57045663
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTGAAGAAGGAGGCTTTTACCTT
3' ss Score
-21.15
5' ss Seq
AAACTGAGA
5' ss Score
-4.04
Exon sequences
Seq C1 exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCCGCTAACCCAGGCATTCTCGTGCTCCTAGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
Seq A exon
CTTATCGGCCTGAGAGTTCAGTGGTGTCAAAAGTACAGGGAAGTACCACAGACAACATTGTGGCACTTCTGGGCCTGCCAGTAACTTGAGCTGTTATTCAAAA
Seq C2 exon
CCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTACTTCGACACATCCTGTCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGGTCATTCCAGCCGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAGGTGAGGGACAGGGAGCCTGTCCCCCTAAAACTCCCTCATCTTCATCATGGTATCCCCTACGCTGATATCTTCAACCACAGAGACTGATGGCCTGACCAGTGGATCCTAACCCCACACCCCAAGGCACTGGACCCCAGTACCCAAATCCCCGATCCTAGCCCTGTGTCCTGACCATGGTACCACTGCACCCCACACTTGAGCCACAGGATCCCAGGACTTGATCCCCAACTTCACAACCAGACCTCGAAGCCCCAACCACTGGACCCCACATATCAGCAGCCTGACACTTGATATGTAAAACTATCCATACCCTGGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046329_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(17.2=19.6),PF0015322=Mito_carr=PU(62.5=68.6)
A:
PF0015322=Mito_carr=PD(36.2=70.0)
C2:
PF0015322=Mito_carr=PD(61.1=93.5)
Main Inclusion Isoform:
ENSMUST00000040280fB16832
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATTGCCAGTTACCCTC
R:
CTGTCCCTCACCTGGATGTGA
Band lengths:
246-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types