MmuINT1014513 @ mm10
Intron Retention
Gene
ENSMUSG00000091390 | Gm17168
Description
predicted gene 17168 [Source:MGI Symbol;Acc:MGI:4937995]
Coordinates
chr17:57045522-57047007:+
Coord C1 exon
chr17:57045522-57045684
Coord A exon
chr17:57045685-57046904
Coord C2 exon
chr17:57046905-57047007
Length
1220 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ACTCCCTTTTTTTCTCTCAGTTT
3' ss Score
9.92
Exon sequences
Seq C1 exon
ACCACGTAGGAGATGCTCACGGCTGGAATGACCTTCATGAAGTTGGGGGCAATGCCCCGGTAGAGGCCCCATACACCCTCCTGGGACAGGATGTGTCGAAGTAGACCCACCATGGAGACCTGCGGGCCACCCTCAATGGAGGCTGGAGGTGGTTGGAAGCCTG
Seq A exon
GTAAGACCAAAGCTTCCCCATCTCATTTCTCCCTCCTACCTCATCCTAGGGCTGAGCTAGGCGGCCATTTAAACAGAAGGCAGAAGGGTAAGACAGAGGAACAGTGGGACCTACCACAAGACTCAGGGTGTCTGTGGGCTTAGGAACTGTCAATCTTAGGGACTACATTTGGGGATGAATGGAAACACCAGGTATATACATGCATGAGAACATGTACATGAGTCTGTGTATATTTGTCTGTGTATGCGCATATGTACTGTGAAAGTTTGTGTGTACATGTGTGGGAGTGCATGTGTGCCTGTGTGTATGCATTGTGAGAGTGCATATATATATGTGTCTGTGTGTGCATGTGTGAGAGTGCATATCTGTGACTTGCGTGTACATGTGTGAGAGTGTGTCTGTTAGTATGTGTGAGACTGCATATGTGTGTTTGTGTATAAGAGTACATATGTACAACTATATGAGAGTGAGTGTGAGAGAGAGAGAGAGGGTGCATAAATGTATGTGTGCATGTATGAGTGTGCAGTGTGTCTTTGTGTGTGCATATGCATGTGTGAAAGTTCATATGTTCATGTGTGAGTGCATGTCTGTGTGTGTAAGTGCATATGTGTTTCTGTGTATAAGAATACATACATGTGTCTGTATGTAAGAGTGCATGTGTGAATACATGAGTGTCTGTGTGTGACAAGAGGTGAGAAATACCCCCATCCTTAAAGTTAATTCTCTCCTTCTCTTCAGGGTTAGTGTCTACTTTTCCTTCCATTCTCCATCCCAAAGCTGGCTGTTTGGAGGAGCCCTCTGTGGTACCTAATCTAAGCTGGGTTCCTACCTCTTCTAAATCACATCTGATCATGGAATGACTTATGTTGCCTTTGTCCTCATCCCCAGGAATGAGGGATCTCTGTGAATTCCAGGCCAGACAGGGCCACACAGTGAGATCTTGCCTAAAAACAATGATAATATGGCCAGGTCTGCTGGCCATGCCTCTAACCCAAGCATTTGGGAGATCTTTCTGATCAAGGCCAGCCTAGGCTACATAGTGAGTTCCAGCCAGTCAGGGGTACATAGTGAGACCCTGTCTCACAAAATAAATAAACAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACCCAGCAAACTGTCCTTCCTTGACCTTGGCTAATGTTGTTCTAAGCAACCTCCACTCCCTTTTTTTCTCTCAG
Seq C2 exon
TTTTGAATAACAGCTCAAGTTACTGGCAGGCCCAGAAGTGCCACAATGTTGTCTGTGGTACTTCCCTGTACTTTTGACACCACTGAACTCTCAGGCCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091390:ENSMUST00000169146:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACGTAGGAGATGCTCACG
R:
CTGAGAGTTCAGTGGTGTCAA
Band lengths:
257-1477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types