MmuEX1023975 @ mm10
Exon Skipping
Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165283249-165287824:-
Coord C1 exon
chr2:165287784-165287824
Coord A exon
chr2:165283528-165283600
Coord C2 exon
chr2:165283249-165283407
Length
73 bp
Sequences
Splice sites
3' ss Seq
GCCTCTCTTCTCTCCAGCAGTAG
3' ss Score
5.49
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GAGCTTCCGGCAGGAGGCTCCCGGCGAGAGCCTGGGCGGAG
Seq A exon
TAGCGCTGGGGACCTGTGACCGCTGCATCCAGCTAACCATGGGACCGTTTGGCTCTGGCCACCAGCCCCTTAG
Seq C2 exon
CCACCTTCAAGAGAGGCTCCTGTTCCTGCTGGCCCACGGATGGGGAGGTGGGCCCTGGACGTCGCCTTTGTGTGGAAGGCAGCTCTGACCCTGGGCCTGGTCCTTCTATACTACTGCTTCTCCATAGGCATCACGTTCTACAACAAATGGCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-'0-7,'0-5,15-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF084496=UAA=PU(14.4=62.5)
C2:
PF084496=UAA=PU(16.9=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types