DreEX6080073 @ danRer10
Exon Skipping
Gene
ENSDARG00000037517 | slc35c2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:ZFIN;Acc:ZDB-GENE-030131-2202]
Coordinates
chr23:20505045-20506086:+
Coord C1 exon
chr23:20505045-20505304
Coord A exon
chr23:20505670-20505818
Coord C2 exon
chr23:20505936-20506086
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTGTTTTTTAAAGAGT
3' ss Score
7.79
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
CCTTATCTATATCGAATTCAAATGTTCCCGGGCTGCAGCGCATGTGTCAGCAGAGCAACGTCCACGTCACAGCAGCGCAAGTAACTCACAGGGGTGTCTGTAGGTTTGCAAAAACCCTCAATCATTAAATGACACGATTCACTAATAGTAGCGTGTTAATGTAAACCTAACGCTCCGAGACGACTCGCGCGACCAAATGATGGTTACATAGTGTTTATTAGCAGCAGCTTCTCGTTTTGGAGGACTATGTAAACAGTGAG
Seq A exon
AGTGTTAGCTGAGCCCTGTGGTATCCGGGTTGTCCAGGATGGCGTGCCCGACACACTTCCTCTGCAAGGCGCTGCGCACTGTGGGTCTGGTGCTTTTCTACTATGCGTTTTCTATTGGCATAACCTTCTACAACAAATGGCTCATGAAG
Seq C2 exon
GACTTCCACTTTCCTCTTTTTATGACCCTGGTCCATCTCACTATAATATTCTGTTTATCCACACTGACACGCTCTGCTATGCAGTGCTGGACAGGAAAGCCTCGAGTTACTCTTCCCTGGAAGGTCTACCTTTCTAAAGTAGCCCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037517-'0-4,'0-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0089215=EamA=PU(15.8=59.5)
C2:
PF0089215=EamA=FE(36.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGGTGTCTGTAGGTTTGC
R:
ATAGCAGAGCGTGTCAGTGTG
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]