BtaEX0033114 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003635 | SLC35C2
Description
solute carrier family 35 (GDP-fucose transporter), member C2 [Source:HGNC Symbol;Acc:HGNC:17117]
Coordinates
chr13:75807043-75810010:-
Coord C1 exon
chr13:75809745-75810010
Coord A exon
chr13:75807524-75807576
Coord C2 exon
chr13:75807043-75807395
Length
53 bp
Sequences
Splice sites
3' ss Seq
CACATTTGCATTTTTAAAAGGTC
3' ss Score
6.51
5' ss Seq
GAGGTGACA
5' ss Score
3.85
Exon sequences
Seq C1 exon
TTGATCACAGGAGACACAACCAAGGGGAATGCTCAGGCCGGGTCCCTGGGGAGCCAAGGCGCACAGCACGCGATTTCGCAGACCGCACGGGAGGACCGGCCCCCGATACCGCCCAGCCCCGCCCAACACGACCCCGCCCCCGACACGCTCCGCCCCTAGCCCCGGCCCCACCCCCAGCGGCTTCCGGCAGAAGCGCCCCCTAGCGGCGGCGGTGGGCCTCGCATTTCCGGCAGGAGGATCCGGGCCTGCAGCGCCGTCAGGGCGAG
Seq A exon
GTCACTTTGGTGCGAATTCACGGAGAAGAGCTCGAGGTGACAGGAGAGTGGAG
Seq C2 exon
TCTCAGCTCTGGGGTCCAGCGAGCCGCGTCCACCGTGATCATGGAGAGGGTCAGCTCGGTCCACCAGCCCCGAAGGTGAGGACGGCACCTGGGGCTCCCTGGACGATTCCAGATCATGGAAGCGGCAGCCAGGAGGCGTGCTTGCTGAAAGTCGCAGGCCCAGCCCGACCGGCCCTTCCTGAGGGGCGTCTTCCCGAGAGGTGGTTGCTGCCCCTGCCGGCCAGCGTCTGCGGATGGGGAGGTGTGCCCCCGACGTGGCCTTCGTGTGGAGGGCGGTGCTGACCCTGGGGCTCGTGCTGCTGTACTACTGCTTCTCCATCGGCATCACCTTCTACAACAAGTGGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003635_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAGCGCCCCCTAG
R:
TGACCCTCTCCATGATCACGG
Band lengths:
134-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development