Special

MmuEX1023976 @ mm10

Exon Skipping

Gene
ENSMUSG00000017664 | Slc35c2
Description
solute carrier family 35, member C2 [Source:MGI Symbol;Acc:MGI:2385166]
Coordinates
chr2:165282783-165283600:-
Coord C1 exon
chr2:165283528-165283600
Coord A exon
chr2:165283249-165283407
Coord C2 exon
chr2:165282783-165282933
Length
159 bp
Sequences
Splice sites
3' ss Seq
CTGCTGGTTCTCCCTGCCAGCCA
3' ss Score
6.59
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAGCGCTGGGGACCTGTGACCGCTGCATCCAGCTAACCATGGGACCGTTTGGCTCTGGCCACCAGCCCCTTAG
Seq A exon
CCACCTTCAAGAGAGGCTCCTGTTCCTGCTGGCCCACGGATGGGGAGGTGGGCCCTGGACGTCGCCTTTGTGTGGAAGGCAGCTCTGACCCTGGGCCTGGTCCTTCTATACTACTGCTTCTCCATAGGCATCACGTTCTACAACAAATGGCTGACAAAG
Seq C2 exon
AGCTTCCACTTTCCGCTCTTCATGACCATGCTGCACCTGGCCGTCATCTTCCTCTTCTCCGCCCTGTCCAGGGCACTGGTTCAATGCTCCAGCCACAAGGCCCGGGTGGTGCTGAGCTGGACGGACTACCTCAGAAGAGTGGCCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017664-'15-11,'15-7,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.021
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF084496=UAA=PU(14.4=62.5)

							
A:
NO

							
C2:
PF084496=UAA=FE(33.8=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000017808





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000104921, ENSMUSP00000104922, ENSMUSP00000104923, ENSMUSP00000116288, ENSMUSP00000118227, ENSMUSP00000118605, ENSMUSP00000119071, ENSMUSP00000120036, ENSMUSP00000123299, ENSMUSP00000123450, ENSMUSP00000123757, ENSMUSP00000125708
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr20:46358387-46358763 
HIGH PSI
HsaEX0059408
(SLC35C2)
Human
(hg19)
chr20:44987026-44987597 
HIGH PSI
HsaEX0059408
(SLC35C2)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr13:75807043-75807210 
Chicken
(galGal4)
chr20:11076454-11076586 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr23:20505670-20505818 
HIGH PSI
DreEX6080073
(slc35c2)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GACCTGTGACCGCTGCATC

				
R: 
TGGGGGCCACTCTTCTGAG

				
Band lengths: 
211-370

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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