MmuEX1024062 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83300471-83303476:+
Coord C1 exon
chr6:83300471-83300538
Coord A exon
chr6:83301368-83301723
Coord C2 exon
chr6:83303326-83303476
Length
356 bp
Sequences
Splice sites
3' ss Seq
CAAAACTTTTTTTTTTTCAGGGA
3' ss Score
9.61
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAAAAAGATCTTCCAGTTGGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAG
Seq A exon
GGAAGCATTCAAGGCCCAAATGCCAGGGCCCTCATACCAATGTGGTCCTTGGTGTTCTCAATGAGATGCCAGGCATGAAGAGAGTCTTGCACACAGCAGGTCCTGGATATGACTCAAACTGCGTGGGTGTCAGTGCCAGGGTGTGTGGGTGTGCTTAGAGGCCAGAGAGGACATCAGATCTCCCAGACCTATGTTGCAGGTGGTTAGGAGCCACCACATGGGTGCAAGAGCATTCCTCTACAAGAACAAGTGCTCTTTAACCACTTAGTCATCTCCCCTCAAATAACTTTTAAAAAGAAAACCTTTATACTAAATCAAATCTCTAACTCATCTGCAGACAAGAGCCTACAATCAAG
Seq C2 exon
CATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTACTCACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'41-53,'41-52,42-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTTCCAGTTGGAGTTACTCTCT
R:
CACCTCTCTCCCATAGTCCTCC
Band lengths:
214-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types