MmuEX1024572 @ mm10
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36224109-36227262:+
Coord C1 exon
chr15:36224109-36224241
Coord A exon
chr15:36225547-36225619
Coord C2 exon
chr15:36227136-36227262
Length
73 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCTTTGTTCCTCCAGGCT
3' ss Score
11.05
5' ss Seq
AGAGTGTGC
5' ss Score
-1.56
Exon sequences
Seq C1 exon
ATGAAAAAATGTTTCAAGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAATGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq A exon
GCTCTGCTTTCTGAACCACGGACTTTCCTTCCTCATTGGAGAAGCACCCTTGGCCTTCCTTTTTCAACCTAGA
Seq C2 exon
GGCTCTCTGTTACCTGAAGCTGGGCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAGCCACAGACTAGCGCTCGCCCAGAAAGGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'27-25,'27-24,28-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
PF134141=TPR_11=PD(20.4=44.0)
C2:
PF134141=TPR_11=PD(36.8=58.1)
Main Inclusion Isoform:
ENSMUST00000047348fB17302
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCCCTCAAGGAAGAAGGA
R:
CACAGTCCAGCTTTGCCTCTT
Band lengths:
173-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types