MmuINT0150791 @ mm10
Intron Retention
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36224109-36227262:+
Coord C1 exon
chr15:36224109-36224241
Coord A exon
chr15:36224242-36227135
Coord C2 exon
chr15:36227136-36227262
Length
2894 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CCTTGCATTATGTGTGCCAGGGC
3' ss Score
5.88
Exon sequences
Seq C1 exon
ATGAAAAAATGTTTCAAGCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAATGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq A exon
GCAAGTTCTTTGTGATTTATGTAGGTCTTTGAATAGTGTTGATTATTTTATTTATTCATTTTATGTGCTTTGGTGTTGAGGGTGTTGGATCCCCTGGAACTAGCATTATAGATAGACAGGTAGGAGCTGCCATGTGGGTGCTGGGAATAGAACCCACATCCTCTGGAAAAACAGCCTGAGCTCTTAACCATTGAGCCATCTCTCCCGCCCAGTTTTGATTATTTTAAAATAACTTTTGAGAAGTTAGCTTACTACAATTCCTTAATTCCATGTACTGCTTCTAGGAATCAGTATGCAAGCTGTCCTGGGTGTCTCTGAAAGAGCTGGACTACATAGAGTTAGGAGAGGGACTGGAAGGATGAAGGTCTGATGCCCTGGTCCCATGAGCATCTTTGGTAACTAAGCTGGTCCTGCTCTGGCCCTGCACGGTCTGCCTGGCCAGGCTGCAGCAAGCTGGGTCTAAGCTCTGCCCAGTGTAGAAGCTGGTGCAGGGTTGAGGGAGGTGACCAGTATCATTCAAAAGATGTCTTATGGAGCTGTGTCCTTTTGCTTATGAAGTACTAAAGGCCCGTCTTTTTTTCTTTTTAACAGTGCATAGTAGAAACTGGCAGGCTGCTCTAGAATGCAGCCTGTACCATCTTTACCACTTCTGATTCTTTGGGGATTTGGTGGAAATAGGTAGGGTATGTGATAACAGAAAGAATGAAAGATCAGTTTCAGGCATTTTTCTAGTTGTATCATACAATCTTTAAAGGGTTTTTTTTTTCTTTTTTGAGAATTTCAGACATGTGTACTGTATTTATATAATTTCTACCCCTCCCTCTTTTTAAAAAAATATGTGTTTTTTCCCTGCATGGATGTATGTGTACGCATGGTACCTACTGAGGTCAGAGGAGAGTGTTGGATCCCAGCTACCAAGCGAATGCTGGAAACCTGACCCAGTGCCCTGAAAGAGCATCAAATGCTTGAAATTGCTGAGTTCTGTCCAACCCCTCAGATAAATCCCTGACTGGCCTCTTACTGTGGCTTTGTACACTTTTCCCACTTGTGGCCACTGCTGGCTGAACATTGTCACTAAATCCAAGAGTATTCCTCCTCCTGTCTCATCAGTGGCCAGAAATGGCTCATTGGTTTCTGTGAAGGCCTTGCTGCCCTGGCTGTAGTGGCCTGGAGCTCAATGCCTGGGCCTCCTCTCTGCAGGCTTCTCATTGTCTGGTATCTTGCCTTGGAGGGCCTGCTTGAGCGCCAGACCAGCTCACCTCCCTCGAGTCTGGCTCCACTTACCTCCTCTCTTTGTTCCTCCAGGCTCTGCTTTCTGAACCACGGACTTTCCTTCCTCATTGGAGAAGCACCCTTGGCCTTCCTTTTTCAACCTAGAGTGTGCTCGCCTCTCAGTACCCTCAGAGTGACTGGCTTACCACCCCCAGCTCTCTGCACCCAATACCTGCCTTAGACCACTGTTTTCTACTGCCTTCTCTTTCCCCTTGTCCCACTCTCCCAGTTGTAGCTAGAGTGAGCATGTCACCCAAGGGAACAAGGCCCTTTGTGACCTGGCCTGGATCCACCCTTCCATTGCAGCCAGGCACTGCTTTTCCAGGTTCATCAAGAACACCATGCTCTGCCCTGGGAAGGCTATGCCCAGGCTGTGTCCTTGGGCTCCCTCTGACCCTCTTCTCTCTCCCTTAACTCTAAGCCTTGGCAAGATCATTCTCCTTCATACGCCAATATGCCTGCTTTTAACTTGACGAACTTACACCCCACAACGTCTCCTGGCTGCTCTGCCACTTGCTTTTCCCCACAAGGTCTTGGGCCTTGGCTGTGAGCTTCCAGACCCACTTTACAGATATCATTAGAGAGGCTCATTCAGTTCCCTGTCTCCACCCTGTTGCATCTTGTTTTGGATCAGGCTATATTTTGTTTGCAGTGGGCTCCCCAGTGATGTAATTTTATCCCCTGTGAGAGTGAGCACTGTGGCTGGCTGCAGGTGTAAGTGCTAGTTGAAGCAGCTGTAGCTTAAGGCAGTCTTAGTGAGCTGTAGCTTAAGGCAGTCTTAGTGAGCTGTAGCTTAAGGCAGTCTTAGTGAGCTGTAGCTTAAGGCAGTCTTAGTGAGCTGTAGCTTAAGGCAGTCTTTCTTACTGAGCTGGGTTGATCCTTACTAGCTACTTCTTCCTTTTAAAAATAGATTTAAAAAAAACTATAGAAATTATTTTAGCTTTTTAAGATTTTTTAACATTTTTTTATTAGATGTTTTCTTCATTTAGATTTCAAATGCTACCCCCTTTCCTAGTTTCCTCTCTGAAAATCCCCTGTACCCTCCCTCTTCCCCCTGCTCCCCAACTCACACTCCAGCTTCCTGGCCCTGGCATTCCCCATACTGGGGCCTAGAATCTTCGCAAGACCAAGGGGGCTCTCTTCCCAGTGATGGCCAACTAGGTCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGGCTACTGGTTGGTTCATATTGTTGTTAATAACAAGATTTTGCTGACAGGACCCTGATATAGGGTCCCCAGTGAAGGAGCTAGAGAAAGTACCCAAGGAGCTTTTTAAGATTTTTAATAGTGTGCATGTTTGTGGGTGTGTAGACATGTGCACATAGGTGTGTGGGCATGGGTGTGCAGGCCTGTGCACATGGGTGTGCACGTGTGTGGGTGTGTGCACCTGGGTACAGAGGTGAGAAGCAGGTGTCAGATCCCCTACAGCAGCCAGTTATAAGCTACCCTATGTGGACACTGGGAACTGAGCTCAGGTCCTCTGCAAGGGCCGCAAGTGCTTTTAAACACAGCTAACCTCCCCAGCCCCGCTAGCTGTCGAAATACACTGATCAGCTTCCTCTCCTTTCCTTGCATTATGTGTGCCAG
Seq C2 exon
GGCTCTCTGTTACCTGAAGCTGGGCCAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAGCCACAGACTAGCGCTCGCCCAGAAAGGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617:ENSMUST00000047348:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
NA
C2:
PF134141=TPR_11=PD(36.8=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types