BtaINT0139370 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032544 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr14:66328200-66331005:-
Coord C1 exon
chr14:66330873-66331005
Coord A exon
chr14:66328330-66330872
Coord C2 exon
chr14:66328200-66328329
Length
2543 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TGAGTTCCATTTCATTACACCAG
3' ss Score
-2.31
Exon sequences
Seq C1 exon
ATGAAAACGTATTTAAAACCCTTAAAGAAGAAGGAAATCAATGTGTAAAAGACAAAAACTATAAAGATGCCCTTAGTAAATACAGTGAATGCTTGAAGATTAACAACAAGGAATGTGCCATTTATACAAACAG
Seq A exon
GCAAGTTCTCTGCCACTTGCTGTATTTCTTATGTTGATATTTTTGATGAAAAAATTATAGACTGATTAATTGCCAAAATTTTTTCCCATGACTCTGAGAATTTGGTATATATAGTAAATTGTTCTAAGTGAGTTTTTTGTTTTTTTGTTTTTTTTAAGAAGTAAGGCCATAGGAGAGATTGAAAGCCTGAGGTGTCTTGGTATCTTGTTGCTGGGAGGGCTGACACGGGCTGTGTTAGGGCTGTGTTAGGGTTCCTGCTCAGCCATGGCTGGCTTGGCTGGTGCTGCCCCTCTCTCCCTGGTGTGAGGCCTCCCTGCCCCCGCTCCGTCCCTGGTGTGAGGCCTCCCTGCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCCCTCCCTCTCTGGTGTGAGGCCTCCCTGCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCTCCCTCCCTGGTGTGAGGTCTCCCTGCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCCCTCCCTCCCTGGTGTGAGGCCTCCCTGCCCCCTCCCTCTCTGGTGTGAGGCCTCAACCTCCAGAGTGGGACCGCGAATCAGCTGTCTTGCATGCTAGTGTCTCCAGTGCCCCTTTCCTCTTGAAGTACTGAGGGCAGGGTCCGTGTCTTCTCGAGTGTAGTCGGGATGAGCCGAGTGTTCCAGAACGCTGCTCACGTTATGGTGAAAAAGGTAGTTACCTGGAATACAGTGATTGGGGATTTTTTAGGTAGTAGAGAGTCTTCAGTGACAAGGACGAATAAGGTATGGTTTCTAAAGAATAGTGACTCGGCGTGGGGTTTTGTAGCTGTTTCAGAAAATGTTTTAAACTTGTCACTGTTTTGTTTTGGCCATGTTTTCCTCTTTTTGGCGACCTTCTTTTGTGAAAAGTTCTCGTTCTAAACCAGCAGGTATTTTTCTGCCCGTCTCCTGTTCGGTCTTTGTGGTCTTGGGCGTCAGTGGCCTCTTAATTTTCCCCAGAGACTGCCTCCCCTCTCCTGCTCGCATGCCTGGCACTCCTCTGCTCCCTCTCTAAGGTTTTCTTTTCTTTTTTTTAAGCCTTTTCTTTCCCTGCTGTTCTTGGGTTTCTAAAGGTGTAGATCTCTTTTTCGCTCGAATATCCTCTGGCCCATTTCATATTCTCCCCAGCTCCATTTACCACCTTCCAGTTCTGAGCTCCACATCTCTGTGGACATGAGTTTGAGCAAGCTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCGAGCTGCAGTCCACGGGGTCACAAAGAGTCGGACACGACTGAGCGACTGAACTGACTGATCTCTGTCTCTGAGCCCTGGACCTGAGCGCCGCCGCCCTGCCTTCTGTGCTCATGATGGGTTCTCACCCCTGACCCACGCCTCCCTCGTCAGTCCATGCAGCGCAGGTGTCCTGACTTCTAAACTCTTCTAGGACTTCTAAACTCCTTTCCATCCCCCCTCCCCATCAGTCCCGCTCTGGCTGTCACCAACTCCCCCTCACCGTCTGCCGCACCCTCCCGGTGTCCCCGGCCCAGCCTCGTCCCCTCCGATTCTCCACTTGGCAGCTAGAGTGACCTTCCCCAAACACAGTGAATGGGTCCGCCTCTGTTTAAAAACCCATCGTGCGTACTAAGTTGCTTCAGACTCCATGGACAGTAGCCCGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTGGCCATGCTCTCCTGCAGAGGATCTTCCTGACCCAGGGATCGAACCTGTGTCTCTCACGTCTCCTGCATTGGCAGGTGGGTTCTTTACCACTAGCACCACCTGGGAAAACCTTAAAAACCCATCACCAGACTCCATTAAGTGCTGGATAAAGCTCAGCCTCCTGCCAGGCCCTTCCTGTCTGGCCTCCCCTTCCCCAAACCTCCCCTACACTCCTGCCATAGGTAGCGCCAGGAGCGCCACGTTCTCTGTCACTGTTGAACTCTGCGGGGCTGTGCGCCCTCCCTCCATCTTAAGTCTCAGCCCTGCGCCTTCCCATTGGATAATACTCGCTGCGCACGTACTCTGGGCTTCAACTTGAATGTCCCTTCTTCTGGGAAGTCTTCCCTGACTGTCTTTTCACTTCAGCTTCACCACGTCTGAAGAGATTCTCAGCTCTGTGTTCCCAGAGCATCCTTTACAGATTTCATTGCATTTGCTTCTTTTGATAGACTGTCTCTTCCCCTAGACTGCAGCCTCCTTGAGGGCCTGGACTGTTTGGATTGCAGTGGTATCCCCAGGGTCCCTAATTCCAAGTATTGCCAGAAAATGGCATCGCTGGAGAAAAAAATGTTAGGTTTCAATTGCAGCAGCTGTGTTATAGAAACAGACTTATTTAGTTATTTTCTGATTTCTATTAGCTGCCCCAGTTTATGGATATGTTGTTTTTACCTTTGATAATGCTGAGTTCCATTTCATTACAC
Seq C2 exon
CAGAGCCCTCTGTTACTTGAAGCTGGGCCAATTTGAAGAGGCAAAGCAGGACTGTGAACAGGCCCTTCAGATGGATCACGGGAATGTGAAAGCTTGCTATAGACGAGCCCTTGCTCACAAAGGGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032544:ENSBTAT00000046176:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(60.9=93.3)
A:
NA
C2:
PF134141=TPR_11=PD(37.7=59.1),PF0051523=TPR_1=PU(41.2=31.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development