HsaINT0157141 @ hg19
Intron Retention
Gene
ENSG00000104450 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:11212]
Coordinates
chr8:101243384-101245765:+
Coord C1 exon
chr8:101243384-101243516
Coord A exon
chr8:101243517-101245638
Coord C2 exon
chr8:101245639-101245765
Length
2122 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GTTCCATTGCATTATGCCAGAGC
3' ss Score
3.88
Exon sequences
Seq C1 exon
ATGAAAAAACATTTAAAGCCCTTAAGGAAGAAGGAAATCAATGTGTAAATGACAAAAACTATAAAGACGCCCTCAGTAAATACAGCGAATGCTTAAAGATTAACAATAAGGAATGTGCCATATATACAAACAG
Seq A exon
GCAAGTTCTTTGTAACTTTATATATTTCTTATGTTAATAGTTTTGATTATTAAAAATATTTTAAGTTATTTTATTAACACAATTAAGTAATTGCCAAAGTTTTTTGTGATGGTTCTAAGAATTTCTATAGCAAGCTGTCCTAACCAAGTGTGTCTGAAAGAGGTGAGGCCGTGGGAGTTCTACAGAGACTGGAAGCCTGAGGTGTGGGCGGGATGGGAGGTCTGACATAGTTTGTGCCACCAGGTTCCCAAAAGCGACCATGGCTGCTTTGGCTTGTGCAACTCTGATTCGGCATTTCCTGGCTTGCCGGCCTCGTTGCAGCTAGCTGGGCCTGGGCATTGTCCAGTGTGGGAGGAGCAGGAATCAATGGCCTTTCAAAATAGTGTCTTGGCTGGGCACGGTGGCTCACGCCCATAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAATTAGCCAGGCGCAGCGGCAGGCACCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATAGCACCACTGCAGTCTGGCCTGGGTGAAAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAATACTGTCTTAGGGAGAATGCCCTTTTCCTTCTGAAGTGCTGCGGGAAGGCACCAGCGTCATTTATAGCGTGCAGCAGGAATGGGCAGATTGTTGCTCAGGTACCGTCTTTACCACGTAGTAAAAGATACCTATATAGAATATGGTGATAGAATATTGGACAAAAGATGTCACTAAATCCAACAGATGTTTTTCTGCCCTTCTGTTCAGCCTCTGTAGGATCGGGCATTATTGGTCACTCAGTTTTCTGTGAAGACTCCTCCTCCTCTTGGCTGCGGAGGAGGAGGCTGGCAGCTCATTGCCTGGTTCTCGTCCTCTCCCTCTCCTTCTGTAGGCTTTTCTTTCCCTAGAATTCTCATAGTTCTGAGGGTCTAGATCCTTTTTCCTTTCTACGTACTCTAGAGGCCATTCCATCCTCTCCCCAGGTCCACTCACCACCTTACAATGATGTCTTCCAAATCTCTGTCTTCTGAGCTCCAGACTGAAGCGCTCCCCATCTCTTCTGCACTCAGGGCTGGATATCATCCCCTACCTCCCTCTTCCAGTCAGCAAGCTCAGATGCTCCTACCTTCTAAATCCCAAATCCATCTTCAGTGTGACCCTTTCTGTCTCCTTGCCACCATCCCCCTGTCATTCCCTTGCTCTGGGCCACTGTCCTCTCCTCCTAAATGTCTGCAGCACCCTTATGGTGTCCTTGCACAGCTTTGTTCCATCATCTCATTCTCCAAGCTGTAGCCAGAGGGACTGTCTAAAACATGGCAAATGTGTCAGCCCCTATTAAAAACCCTTCATCGGACTTCCATTAAGCTCAGTTTATAAAGCTCAACTTCCTTCCATGACTTACAGTGCCCTTCGTGATCTGGCCTGCCTGCTCTTCCAGCCTCATCCCTGCATTCCAGCCATATGGAACTCTTCTTAATTCTTCAGGAACACCATATTCTCTTCCACTGTAGGTGCAGGTCTGTGCACTCGCTGTGTCCTTGGCCTCCACTCCCCGCTACCTCCATCTGAACTTTCTCAACCCAGTGCATTTGCATTGGATAATTCTTAACTTCATACTCTGGATTTCAACTTAAATGTCACTTCTTCCAGGAAGTCTTCCCTGCCTGCTCTGCGCCTTGTCTCAGCCCCACTGAATCTGATGTAGTTCTCAGCTGTGTGCTCCCAGAGTACTTTGCACAGATTTTATTGTGTTTGCTTGTTTTAATGGTCTGTCTCTTCCACTTGATTGCATCCTCCTTGAGGGCTGTGACTGTATTTTGTTTGCGGTTGTATGCCCAGTGCCATAATTGAATCAAATGTTAAGTTTCAATGGAAACCGCAGTGGTATAGCAACAGACATATTGAGCTATTTTCTGATTTTTCTTAGCTGTCTAAAACTTACAGATAGCCAATCTTTACCTTTCATAATACTGAGTTCCATTGCATTATGCCAG
Seq C2 exon
AGCTCTCTGTTACTTGAAGCTGTGCCAGTTTGAAGAAGCAAAGCAGGACTGTGATCAGGCACTTCAGCTAGCTGATGGGAACGTGAAAGCCTTCTATAGACGAGCTCTGGCTCATAAAGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000104450-SPAG1:NM_172218:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
NA
C2:
PF134141=TPR_11=PD(36.8=58.1),PF0051523=TPR_1=PU(41.2=32.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)