RnoINT0141950 @ rn6
Intron Retention
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75046170-75048492:+
Coord C1 exon
chr7:75046170-75046302
Coord A exon
chr7:75046303-75048365
Coord C2 exon
chr7:75048366-75048492
Length
2063 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
CTCTCCTTGCATTGTGCCAGGGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAAAAAATGTTTCAAGCCCTTAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGACGCCATTAGTAAATACAACGAATGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAG
Seq A exon
GCAAGTTCTTTCTGATATGTAGGTCTTGATTATCTTGATAATTTTGTTTGTTTATTTTGTGTGTTTTGGTGTGAGGGTGTCAGATCCCCTGGAACTAGAGTTATAGACAGGTAGGAACTGCCATGTGGTGGCTGGGAATAGAACCCACATCCTCTGGAAAAGCATCCAGTGCTCTTAACCATTGTGCCATCTCTCCAGCCCAGTTTTGATTATTTTAAAATAACTTTTGAGAAATTAACTCAGCTCATTAATCCCATGTAGTGCTTCTAGGAATCAGTATGCAAGCTGTTTTGGGTGTCTCTGAAAGAGCTGGACTACAGAGGTCAGAGAGATTGGGAGGATGAGGTCTGATGACATTGTCCATGGTCTTCTTTAGTTACTGAGCTTGTCCTACTCTGGCCCTGTGCTGTCTGCTTGGTCAGGCTACAGTGAACTGGATCTAAGCCCTGCTCAGTGTAGAAACTGGTGTGGAATTGAGGTGGGGGTGACCAGTGTCATTCAAAATACCGTCTTATGGGGCCATGTCCTTTTGCTTTGCAAGTACTAAAGGCCAGTCTTTTTTTTTTTTCTTTCTAACAGTGAGGACTGGTATGCTGCTCCAGAATGCAGCCTATACTATCTTTACCACTTTTGATTCTTTGGGGTTTGGCGGAAGTAGGTAGGGTATGTGATAACAGAAAGAATGAAGGATCAGTGTCGGACATTCTTCTAGCTACCTTTAAAGCTCTATCCTTCAGCCTTTCATCAGTGGCTGGGAATGGCTCTGGTTTCAGTGAAGACCTCGCTGCCCCTGGCTGTAGTGACATGGAGCTCAATGCCTGGGTCTCTTCTCTGCAGGCTTCCCGTTGTCTGGTATCTTGCCTTGTGGGGTCTCAATCCCTTATTGTCTACTTGAGTTCTAGACCAGCTCCTCCTGCCTCACATTTGGCCCCACTCAACTCCTATCCTTGTTTCTCCTTCCTCATTGGAGAAGCCGAGTACCCTGGGCCTTCCTTTCCTAAGCAGGCAGCAACCTAGAGTGGGCTCACCTCTAAGTACTCTTCAGAGTGGCTAGCTGTCCCCTTACCACCCTCAGCTCCTCCCCCTCCCCACCCCTGCCTTAGGCCACTGTTTTCTTCTGCCATCTCTCCTCTTGTCCCACTCTCCCAGTTGTAGCTAGAGTGAGCTTTGTGACACATGCCAAGCATGTCACCCCGTTATACGCTTGCCCAAGTGAGCAAGGCCTTTGTGATCTGGCCTGGCCCCACCCCTCCATTCCAGCCAGGCACTGCTTTGCCAGGATCATCAAGAACACCATGCTCTGCTCTGGGAAGGCTGTGCCCTGACTGTGTCCTTGGGCTCCCTACCCCTCTGTTCCTCTCCTCTCTTCCCTAACTCTTAGTCCAGTGCCTTGGCAAGATCATTCTCCTTCACACACCCAGATAGATGAACTGATCTTCAGTTATGCCTCCTGGTTGCTGTGCCGCTGGCTCTGCCCTACAAGTTCTTGGGCCTCAGCTGGGAGCTCCCAGACCCATTTTACAGATACCATTAGAGAGGCTCATTCGCTTCCCTGTTTCCACCCAGCTGCATCCTCGATTTGGATCGGGCTGTATTTTGTTTGCAGTGGCCTCCCCAGTGATGTGATTTCATCCCCTGTGAGAACAGCAGAGCTGGCTTCAGGTGCTAGTTGGAGCAACCAGAGCTTAAAACAGCCTTAACCCTTACTAGCGACTTCTTCCTTTTAAAAAATGCTGTAGAAATTATTTTAGTTTTTTTAAGATGTTTTTATTGTGTGCATGTGTGTGTGGTTGTGTGGGCATGTGCACATGGTTATGTAGGTGTGTGCACATAGGTGTGTGGGCATGTGCACATGGGTACAGAGGTCAGAAGCAGGTGTCAAATACCCTATAGCAGCAGGAGTAGCTATCGGGCAGTTATAAGCTACCCTGTGTGGGTGCTGGGAGAAGAACTCAGGTTCTTGGGAGAGCAGCACGTGCTCTTAAGTACAGCTAACCTTCCCAGCCCCATTGGCTGTCTAAATACACTGATGTGCTTCCTTCCCTCTCCTTGCATTGTGCCAG
Seq C2 exon
GGCTCTCTGTTACTTGAAGCTGGGACAGTTTGAAGAGGCAAAGCTGGACTGTGACAAGGCACTTCAGATAGACAGCAAGAATGTGAAAGCCTCTTACAGACTCGAGCTCGCCCAGAAAGGACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078:ENSRNOT00000013801:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(61.8=93.3)
A:
NA
C2:
PF134141=TPR_11=PD(36.8=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]