MmuEX1026566 @ mm10
Exon Skipping
Gene
ENSMUSG00000033200 | Tpsg1
Description
tryptase gamma 1 [Source:MGI Symbol;Acc:MGI:1349391]
Coordinates
chr17:25369273-25373440:+
Coord C1 exon
chr17:25369273-25369417
Coord A exon
chr17:25370461-25370700
Coord C2 exon
chr17:25373175-25373440
Length
240 bp
Sequences
Splice sites
3' ss Seq
ATGTGTCCCTTTCTGCCAAGGTT
3' ss Score
6.79
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGTTCAGCCCAGCCCAGCCATCAGGTGACAGATAAAAACGGTCATTGGATTCATCTCTGCCATGGGCTACAGGGACCAGGCTTAGCTGAGAGTTTTCAGTGGGCAACATCCAAACCCACTGTCTCAGCCAGAGGCCAGTACCCAG
Seq A exon
GTTGGGTGTAGCCTTCAAATGAAGTTGACAGCCCCTCCCTGTGGTGTGCAATAGGATCAGGTGAGGAGCCTGTATCCTCCTCCCTCCCACCCTGTGGCAGGTGTGAAGCCAACCCTATCCAACCCCATACTGATAGGCCTGGGGCTGGGCAGGGGCATGGGGTGGTCCTGACTCTGCTGTGGGAAGACACCATGGCTCTGGGGCCCTACTGTGGCATCCTACTGTTTCTGGCTGTTTCTG
Seq C2 exon
GTCTGTGAACTCGTCTGATTATCAGGTGCACTTGGGAGAGCTTACGGTCACACTGTCTCCCCACTTCTCCACTGTAAAACGGATCATCATGTACACTGGCTCTCCAGGACCACCGGGGTCCAGTGGGGACATTGCCCTGGTGCAGCTGTCCTCCCCGGTGGCCCTTTCCAGCCAGGTCCAGCCTGTGTGCCTCCCAGAGGCCTCAGCTGACTTCTACCCTGGGATGCAGTGCTGGGTGACTGGCTGGGGCTATACAGGGGAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033200_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
NA
A:
PF0008921=Trypsin=PU(2.1=11.8)
C2:
PF0008921=Trypsin=PU(36.7=91.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGGGACCAGGCTTAGCT
R:
CCCAGGGTAGAAGTCAGCTGA
Band lengths:
302-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types