MmuINT0164374 @ mm10
Intron Retention
Gene
ENSMUSG00000033200 | Tpsg1
Description
tryptase gamma 1 [Source:MGI Symbol;Acc:MGI:1349391]
Coordinates
chr17:25370584-25372648:+
Coord C1 exon
chr17:25370584-25370700
Coord A exon
chr17:25370701-25372476
Coord C2 exon
chr17:25372477-25372648
Length
1776 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGTGTCTCCTCTGGATCAGGGT
3' ss Score
5.37
Exon sequences
Seq C1 exon
CCCATACTGATAGGCCTGGGGCTGGGCAGGGGCATGGGGTGGTCCTGACTCTGCTGTGGGAAGACACCATGGCTCTGGGGCCCTACTGTGGCATCCTACTGTTTCTGGCTGTTTCTG
Seq A exon
GTGAGTGAACTGGCTTGGGGTTGGTGTGGCACTGGGGTGGGAGGGGCCTGCTTCCTCTCAGGAACTTCACCTGCATTTATTCTATTTTCCACTCTGGGCTGGAGCTCAGAGAAATCTGGGAGCCATGTAAGAGGGGTCCGGGTACCTTGAAGTCTGGCCTTAGACAAGCAAAGCCAAGTTCTTCATGGTGGCCTCTGCTTTGTCTGGGCTCCTCAGCTGGGCAGCTTGGCTGTCATTACTGGAGACAGAGGCTTGTGTGTATGTGTGGGGACACCTACAGGACTAGATCCTGGAAGGACACACCTCAAGGAGGACCTAGAGGTTGTGAGGGGCTGAGGCTCACTGCCTCCCAGCTGTTGTTTATGGCCCATGGCTGGTCCCACCCTACCCTGGAACTAGGATGCAGTTGACCAGGCCACAATCAATTAGCTGGGCCCCACCCAGCTGGGCCCCACCTACCTGGCTAGATCTAGCTTTAGCTGCCCAGGATGGGAACATCTACCTCAGGGCCACCTTGGGATCTTCCAGGGTTGGGGGCAGTGCTTAGGCCCACAGGACCAGAGTCACTCCCACGGGCAGTTCCCCTAATCCCTCCGTCTCTATCCTTCAGGCATCGCCCATGAAGCTCTACAGTCAGGTGCACCTCCAACAGATATTTCGGGATTAGAGACCAGTCCTGGCAGGCAGACCCTAGAGGGGCAGTGCCTGTGGTGGGAGAGAGTGACCTGGCCCAGGGAGGCTATGATTTGCCACAGGCTTCTCCTGGGAAGCTGCACCTCTGCCCCATTTGTATCTTCGAGAGCCACTTTCCATCTCCTGCGACACAGCCTGCTGGCTCTCACAGTTGATCTCTTTCTTTTGCTGATGTTGCTCTTGGGAAAGAGACTCAAAGCATCTTCCTCAGGACGTACCTGGTGTTCTGGGTGGGAAGGATGTGGTCTCTTCCATTTCTTTTTATCAATGTGGACCCAATTTCGGGTTTCATTTTGTAGTACAGATTAAGAGGAAAGCCTTCCCCTGTGGGTGATATCTCTAGATTTTCATGAGAAAAAAAATTGAGGTGAAATTTACATAACATTTACTCACGATACAGTGTAGCATTTGTTGACATTTAACACATCCCCAGTGTTTTGTGATATCACATCTATCTAGTTCCAAACATCCTTCTAAAAAGGAAACCCCATTCTCACTTAGGGGGGCACCCCCTACCCCCAGCCTCCTGGGCCTCCATAGCTCCCATCACCTCAGCCCTTCCTCACCCCTTTAATTCCAGGCAGTAAGCCGTTTGCCCAGCTCCACTGAGCATCTTTCTAAGGAGCCTGCTACGTCCTTTGGGGTAGTGTTCGGAAGCCAAGATCCATGAACTTACTGCTTCTAGGGTAGCGGTTCCCAACCTGTGGGGCGCAACCCCTTGGGGGAGATCAAACCCTTTTACAGGGGTCCCCTAACATTATTTGCATATCAAATATTTATATTATGATTCATAATAGCAAAGTTACAGTTATGAAGTAGCAACATAAATAATTTTATGGTTGGGGGTTACAACAACACAGGGAACTGTATGAATGGGTCCCAGTGTTAGGAAGATTGAAAACCCTAGCATGCAACCACAATGCTTCTGGAAAGAGACCAGCGGATGGGGAGCAGAGACATTTGTAGATGCCCCAAGATGCTAGGGCTCCCAAGATGGGAGTCATGGAGGGCTCCCAGAGAAAGGGCATTGAGCAGAATGCCGGTCTCCAGATTCCCTCGCCAACAGTGTCTCCTCTGGATCAG
Seq C2 exon
GGTGTGGCCATCCCCAGGTTTCAAACTCGGGAAGTCGAATCGTGGGAGGGCATGCTGCCCCAGCAGGCACATGGCCGTGGCAGGCTAGCCTCCGTCTGCACAAGGTGCACGTGTGTGGAGGCTCCCTGCTCAGTCCAGAATGGGTGCTCACAGCAGCCCACTGCTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033200:ENSMUST00000024999:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATACTGATAGGCCTGGGG
R:
CAGTGGGCTGCTGTGAGC
Band lengths:
280-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types