HsaINT1045000 @ hg38
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:HGNC:14134]
Coordinates
chr16:1223423-1224628:-
Coord C1 exon
chr16:1224602-1224628
Coord A exon
chr16:1223595-1224601
Coord C2 exon
chr16:1223423-1223594
Length
1007 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCTTCCTCCTTCGACTTAGGGT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGTGTCCCTCAGGACTTTGCAGCCAG
Seq A exon
GTACGTCTCTGACAGGTGTGGGGTGTGGGGGAGGGTGCAGGCAAGGCCTGGCAGGAGGGCCTCGGTGACCCTCTCCTTCCCTGGGGTCCCAATGGGGGCCCGGGGAGGTCATAGTTTGTCGCCGTGGTTTCTGCTCGCATCTCTCGGTTGAGTGGGGCTGGTCGGGGTGTGCTGCAGGGCTGTCTCCCCCACCACCACTGTAGTCAGTCTGTACCTTGGGAGATGCTCTGAGGCCATGAAACAACCTGGCCCTCCTCGAACTTTCTCCCCACAGCGTCCCCACCGTGGCCCTGGAACCAGCTGGGGGCTTTGCCGTGTGGGAGAGCCGGTGCCCCACCCCACACCCGCTGCCTATCTATAAACATCTCTGTCTGTCTACATCCCAGCTTCCCTTCCATTCAGCCCAGTGGCCACACTCCATCACCAGCACAATTATCCAGCTCAGGCAGACCCAGGTGTGGCCAGTGGGTCTCCAGCTGACTTCCTCTTAATTTCTTCTTAACTTACTGAGGTGAAGTTTACAGAAGATAAAGTTACATTATCAAGCGTCCAATTCAGAGGCCCCGAGCACCTTGGACAGTGCTGTCTGCCCCCCGCCCCCCGAATTTTATCCAGCTTCGAATATCTCCACCACCCCTGAAGGAAAACCGGGGCCCACTAGGCAGCCACCCCCAGCACCCCGGGCCTTCTCGGGGGCTCCACCGTTCTGAGCCCCTTTCTAGCCGCCTAGGGGCCCTCTGCAGCCTTTCCACCGCCTCCGGGAGCCCTGGTTAGTTTGTGGAGCATGGTGCTTAGAAAGGACGACCTGAGCCCCAGGCGCGCTCACTGCTCCTGAGACGTCATTTCTGCTGCACCCACGATGCTTCTGGGGAGAGTCTGGCAGACGAGAGAGCTGAAGAGCAAAGTCCCCAAGAAGGCAGGGAGGTGTGGTCAGGGAAGGCTTCATGGAGGAAGTGCAGTGGGTTTCTTGGGATCCCCACCAGGCACCCCTTCCTCCTTCGACTTAG
Seq C2 exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176:ENST00000234798:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGACTTTGCAGCCAG
R:
CAGTGGGCAGCTGTGAGC
Band lengths:
183-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains