RnoINT0155083 @ rn6
Intron Retention
Gene
ENSRNOG00000018701 | Tpsg1
Description
tryptase gamma 1 [Source:RGD Symbol;Acc:631355]
Coordinates
chr10:14727180-14729233:+
Coord C1 exon
chr10:14727180-14727228
Coord A exon
chr10:14727229-14729061
Coord C2 exon
chr10:14729062-14729233
Length
1833 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGTGCCTCCTCTGGATCAGGGT
3' ss Score
4.56
Exon sequences
Seq C1 exon
ATGGCCCTGGGGCCCTACTGTGGCTTCCTACTGCTTCTGGCTGTTCCTG
Seq A exon
GTGAGTGAACTGGCTTGGGGTCAGTGTGGCACTGCATGTATATCCTGTCCTGGGCTGGGAGTGGGCCTGCTTCCCCTCTGGACCCTCCCCTGCATTCACCTTATTTTCCACTCTGGGCTGGATCCCTGAGAAATCTGGGAGCCAAGTAAGAGGGATCTGGGTACCTTGAGGTTTGGGTACAGGTGAGCAAAAGCCAAGTTCTTCATGGTGGGCCTCTGCCTTGTCTGGGCTTCTCAACTGGGTCACTTGGCCATCACTGCTGGAAACAGGCTTGGGTGTATGTGTGGGGACACCTACAGGATCAGATCCTGGTAGGACCCACCTCAAGGAGGACCTAGAGGTTGTGAGGGCTGAGACTGGTCCAACACTCACTATCTCCCAACTGTTGTTTATGGCCCATGGCTGGTCCCACCCTACCCTGGGATTGGGATGGCAGTTGGCCAAGTCACAACCACCTAGCTGGGCCCCACCCAGCTGGGCCATACCTCCCTGACTAGATCCTAGCTTTAGCTGCCCTTGGGACCTTGCATGGGGCAGTGCTTAGGCCCACAGGACCAGAGTCACCCCCATGGACAGCTCCCCTAATCCTTCTGTCTCCATCCTTCAGGTATCTCCTGCGAAGCTTTACAGTCAGGTACGTCTCCAACAGATATTTCAGGGTTAGAGACCAGTCCTGGCAGGCAGACCCTAGAGGGGCAGTGGCTATGGTGGGGGAGAGTGACCTGGCCCAGGGAGGCTATGCACTTACTTGCCCCAGGCATCCCTGGTATTGTGGCTTATGGGGCACAGGCCAGCTTTGCCTGGGAAGCTGCATGTCTGCCCCATCTGTATCTTTGAGAGTCACTTTAGATCTCCTGTGCAACGTGCTGGTCCCTACGGCCCCTCCCTTTCTTCTGCTGATGTTGCTCTTGGGAAAGAGACTTAAGGCATCTTATTAGATGTCCTCAGGACTTACCTGGTGTTCTGGGTAGAAGGGGTGGGATCTCTTCTATTTCTTTTTAAATCAGTGTGAACCCAATTTCCAGTTTCATTCTGCCGTACAGATTAAGAGGGAAGCCCTCCCCTGTGGGTGATCTCTAGATTTTTTCATGAGAAAAAAAAAGAAGTCGAGGTGAAATTTACATCAAATTTACCCACGATACAGTGTAGCATTTGGTGACATTTAACACATCTCCAGTGTTTTGGGATATCACATCTATCTAATTCCAAACATCATTCTAAAAAGGAAAGCCCATTCTCACTGGGAAGGCATCCCCCCACCCCCAGCCTCCGGGGGCCTCCACAGCTCCCATCCATCACTCTCAGCCCTTCCCCACGTCTTTAATTCCAGGCGTAAACCGCTTACCCAGTTCCACTGAGCTATCTTTCTAAGGAGCCTGCCTCTGGGTAGTGTTCAGATGCCAAGATCCATGAACTTACTGCTTCTAGGGCAGCAGTTCTTAGCCTATGGTTGCAACCCCTTGTGGGAGGTCAAACTCTTTCACAGGGTTCCCCTAACATCATTTGCATATCAGATATTTATACTATGATTCATAACAGCAAAGATACAGTTATGAGGTCACAACGTAAATGATTTTATGGTTGGGGGTTTCCCCAATATGAGGAACTGTATTACAGGGTCCCAGTATTGGGAAGGTTGAAAACCTCTGTTTTGGGGCATGTACCCACAATGCGTCTGGAGAGAGACCAGCAGATGGGGAGCAGAGACATGTGTAGAGTCCCCAAGATGCTAGGATTCCCAAGATGAGAGTTATGGAGGGCTCCTAGACAAAGGGCATTGAGCAGAATGCCAGTCTTTGGATCCCCTAGCCAACAGTGCCTCCTCTGGATCAG
Seq C2 exon
GGTGTGGCCAGCCCCAGGTTTCACATGCAGGAAGTCGAATCGTGGGAGGGCACGCTGCCCAAGCTGGTGCATGGCCGTGGCAGGCTAGCCTCCGTCTGCAGAAGGTGCATGTGTGTGGAGGATCCCTGCTCAGTCCAGAATGGGTACTCACAGCAGCCCACTGCTTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018701:ENSRNOT00000025236:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGGCCCTACTGTGG
R:
CAGTGGGCTGCTGTGAGTAC
Band lengths:
207-2040
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]