HsaINT0171534 @ hg19
Intron Retention
Gene
ENSG00000116176 | TPSG1
Description
tryptase gamma 1 [Source:HGNC Symbol;Acc:14134]
Coordinates
chr16:1273423-1274628:-
Coord C1 exon
chr16:1274602-1274628
Coord A exon
chr16:1273595-1274601
Coord C2 exon
chr16:1273423-1273594
Length
1007 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCTTCCTCCTTCGACTTAGGGT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGTGTCCCTCAGGACTTTGCAGCCAG
Seq A exon
GTACGTCTCTGACAGGTGTGGGGTGTGGGGGAGGGTGCAGGCAAGGCCTGGCAGGAGGGCCTCGGTGACCCTCTCCTTCCCTGGGGTCCCAATGGGGGCCCGGGGAGGTCATAGTTTGTCGCCGTGGTTTCTGCTCGCATCTCTCGGTTGAGTGGGGCTGGTCGGGGTGTGCTGCAGGGCTGTCTCCCCCACCACCACTGTAGTCAGTCTGTACCTTGGGAGATGCTCTGAGGCCATGAAACAACCTGGCCCTCCTCGAACTTTCTCCCCACAGCGTCCCCACCGTGGCCCTGGAACCAGCTGGGGGCTTTGCCGTGTGGGAGAGCCGGTGCCCCACCCCACACCCGCTGCCTATCTATAAACATCTCTGTCTGTCTACATCCCAGCTTCCCTTCCATTCAGCCCAGTGGCCACACTCCATCACCAGCACAATTATCCAGCTCAGGCAGACCCAGGTGTGGCCAGTGGGTCTCCAGCTGACTTCCTCTTAATTTCTTCTTAACTTACTGAGGTGAAGTTTACAGAAGATAAAGTTACATTATCAAGCGTCCAATTCAGAGGCCCCGAGCACCTTGGACAGTGCTGTCTGCCCCCCGCCCCCCGAATTTTATCCAGCTTCGAATATCTCCACCACCCCTGAAGGAAAACCGGGGCCCACTAGGCAGCCACCCCCAGCACCCCGGGCCTTCTCGGGGGCTCCACCGTTCTGAGCCCCTTTCTAGCCGCCTAGGGGCCCTCTGCAGCCTTTCCACCGCCTCCGGGAGCCCTGGTTAGTTTGTGGAGCATGGTGCTTAGAAAGGACGACCTGAGCCCCAGGCGCGCTCACTGCTCCTGAGACGTCATTTCTGCTGCACCCACGATGCTTCTGGGGAGAGTCTGGCAGACGAGAGAGCTGAAGAGCAAAGTCCCCAAGAAGGCAGGGAGGTGTGGTCAGGGAAGGCTTCATGGAGGAAGTGCAGTGGGTTTCTTGGGATCCCCACCAGGCACCCCTTCCTCCTTCGACTTAG
Seq C2 exon
GGTGTGGCCGGCCGCAGGTTTCGGATGCAGGCGGCCGGATCGTGGGGGGTCACGCTGCCCCGGCCGGCGCATGGCCATGGCAGGCCAGCCTCCGCCTGCGGAGGGTGCACGTGTGCGGCGGGTCACTGCTCAGCCCCCAGTGGGTGCTCACAGCTGCCCACTGCTTCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116176-TPSG1:NM_012467:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(19.3=75.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGACTTTGCAGCCAG
R:
CAGTGGGCAGCTGTGAGC
Band lengths:
183-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)