BtaINT0118732 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034368 | PRSS33
Description
protease, serine, 33 [Source:HGNC Symbol;Acc:HGNC:30405]
Coordinates
chr25:2273307-2273904:+
Coord C1 exon
chr25:2273307-2273339
Coord A exon
chr25:2273340-2273741
Coord C2 exon
chr25:2273742-2273904
Length
402 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
CGGTCCCCTTGTCCTCCCAGCTT
3' ss Score
7.62
Exon sequences
Seq C1 exon
CTGGTAGTCGATTGCACAAAAATCTGGCATCAA
Seq A exon
GTCAGTGCGACATATACATTCCACCCTCCTTCCTAATCTGTGACCGCCCTCCCCGTCACCCCGTTACCTGACACCAGACCCGTAATCCAGTCCCTTCCCTGCTTCCACCTCCAGGAGCAGCCGGGACCCTGGGATATGTAGGTAAGGAAGCCGCGGAAACCCCCTGTGCCTACCCCTCCCTAACCCCGCCCCCACCCGTCTCCCCGGCCCCACCCCTTCCTAACCCCGCCCCCACCCGACTCCCTAACCCCGCCCCCACCCGACTCCCCCGGCCCCCACCCGTCCATAAACCCGCCCCACCCTGCTCCCCGGCCCTACCCAACCCGCCTCCCTAACCCCGCCCGCATCCGCCTCCCCGGCCCCCCACTGCTCTGCCCACCCCCGGTCCCCTTGTCCTCCCAG
Seq C2 exon
CTTGTGGGCAGCCTCGGGTGTCCAGTCGTATCGTGGGCGGCCGGGACGCCAGGGCCGGAGAGTGGCCGTGGCAGGCGAGCATCCAGCACCGCGGGGCGCACGTGTGCGGGGGCTCGCTCATCGCCCCGCAGTGGGTGCTGACGGCGGCACACTGCTTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034368:ENSBTAT00000027425:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(18.5=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGATTGCACAAAAATCTGGCA
R:
CTGGGGAAGCAGTGTGCC
Band lengths:
190-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]