GgaINT0138724 @ galGal3
Intron Retention
Gene
ENSGALG00000021273 | E1C8L4_CHICK
Description
NA
Coordinates
chr24:5535668-5536263:-
Coord C1 exon
chr24:5536220-5536263
Coord A exon
chr24:5535828-5536219
Coord C2 exon
chr24:5535668-5535827
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CCCTCTGCTCTCCCCTGCAGCCT
3' ss Score
12.35
Exon sequences
Seq C1 exon
CTCCCAGTGTCTGACGGGCAAATTTGTCTCCCTGCGGTGTACAA
Seq A exon
GTAAGCGGGCTGTCCAGCAAGGCATGCTGACAAGGGCAGGCAAGGCCAAGCAAACGCTTGGAAGGGTTTTCTTCCCAGCTTTGCAATGGGCTGGGCAAAGAGGGTGTTCTCCAGCAGAACATTCTGGGTAATACACAGCAATGAAGGTTGCAGCTCTATGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTACTTCCCAGCTTTGCAATGAGCTGGGCAGAGAGGGTGTTCTACCAGCAGCATATTCTGGGTACTACACAGCAATGCAGGTAGCAGCTCTATGCAGGCTGCGCCGAGCACTGCTGGTGACTGCAGTGGTGGGGATGCGCTGTGCACACCCTCTTGGCTTGCCCCCTCTCTCAGCCCTCTGCTCTCCCCTGCAG
Seq C2 exon
CCTGTGGGCAGAGGATTTCGGGCCGAATCATCGGAGGGAAGGAAACCTCGGTGAGCAAATGGCCCTGGCAGGTCAGCGTGCAGTACGGGCCCGTCCACATCTGTGGTGGTACCATCATCGATGCGCAGTGGGTGCTCACCGCCGCTCACTGCTTCTTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021273:ENSGALT00000011876:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.5=9.3),PF0008921=Trypsin=PU(19.2=81.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]