BtaINT0150386 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29011102-29012354:-
Coord C1 exon
chr15:29012311-29012354
Coord A exon
chr15:29011265-29012310
Coord C2 exon
chr15:29011102-29011264
Length
1046 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGA
5' ss Score
5.66
3' ss Seq
TCTCTTCTGCTTCTCTCCAGACT
3' ss Score
10.01
Exon sequences
Seq C1 exon
GTCTGATTGCCCTTCCCAGCAGTATGTTGCTCTACAGTGTTCCC
Seq A exon
GTAAGAAGATGCTCTTCCTCCTGGATTGTGGCCAGTGTGGGGTGGGAGTCGGGGGACAGAGGGATGGAGTCCCTGTGGAAGAGGGCTAACCCTGCGGATCAGAGCCAGGAAGAGGGGCTTGAGCAGCAGGCCTGTTTCAGGGCCAGGGTGCCTGTAAGTCATCTGGATAGACACTCTCAGGGCAGCATTTCCTCTTCTGACTCTGCTCAGCCCAGCAACCTCACTATTCAAGTGTCCTGGATTCTGGGCAGGGGGCAGAGGATTGAGACAGCATGTCAGAGCTCATGGTAGGTGAAGAGCTGGTATTGAATCTTGGGTCTGACCACAGGGCCCAAACCGTTAACCAGTCCACGAGTGCTGTGTTCTCATGATGACCAGGTGGGGTGCCCCCCTGAGCAAGTGGGCACAGTGCTATGGACAGAGCCCCTCAGACCACCGCTGGCTCTACACTCTCTCCTCCTTCAAAGGAGAAAGGAAACTCTGTGCATGATTCCAGGGGATGACTCACTCTGGAACACGTTTGGAAATGTTCCCCTGGGGCACAGGGCCCCCAACAGCACTAAATGACCCCCTGAGAAACCATGTGAGCACCAACTACTTGTGCCTCATGGGAAGGACTTTTCTCCTTCATTCTGAAACCATCCAAATCACATTGCTCATCAATTCAGGGTTGTGTTAGACTTGGTCTGCTTTCCAAAGCTCTTGACAGCAGCCCTCAGGTTCACCATTGTGACCCTAACGCCTGGCACATCACCCAAAGCAGGGGGTACTTAGGAAGCATTTGTTGAATTATTGGAACAACAAATGAGTGGGAAGAAAGAGGATTTCCTAGGATCAGACTTTCTACTGGATGATCCCAGAAAGCCAACCTACCATGTGGGAGCTCTGTGTTGGCAGGAAATAGCTGTGCTGAATCAGATTAAGTGGGCAAAGCAGCCTCCATGGGTGGGTGGTGCCCTCATGCCTGAGCTTCTCTGGGCCTAGGAGCATGGTAGCAGCTCTAAGAAAAGCAGACTTCATAGTTCATCTCTTCTGCTTCTCTCCAG
Seq C2 exon
ACTGTGGCCTGAGGGCCATGACCGGGCGGATCGTGGGAGGGGCGCGGGCCCCAGAAAGCAAGTGGCCATGGCAAGTCAGCCTGCAGTTCTCCCGTACCCACATTTGTGGGGGCACGCTGATCGATGCCCAGTGGATTCTCACCGCCGCCCACTGCTTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=FE(16.5=100)
A:
NA
C2:
PF154941=SRCR_2=PD(5.5=9.1),PF0008921=Trypsin=PU(19.2=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGATTGCCCTTCCCAGC
R:
CGGCGGTGAGAATCCACTG
Band lengths:
191-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development